Pairwise Alignments

Query, 495 a.a., transcription termination/antitermination protein NusA from Pantoea sp. MT58

Subject, 491 a.a., transcription termination factor NusA from Cupriavidus basilensis FW507-4G11

 Score =  490 bits (1262), Expect = e-143
 Identities = 245/494 (49%), Positives = 365/494 (73%), Gaps = 7/494 (1%)

Query: 1   MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIEVRVSIDRRSGDFDTFR 60
           M++E+L +V+A++ EK + ++ +F ALE+ALA+ATKK++E+++++RV+IDR SG+ +TFR
Sbjct: 1   MSREVLLLVDALAREKNVDKDVVFGALEAALASATKKRFEEDVDIRVAIDRESGEHETFR 60

Query: 61  RWEIVEE---VTQPTREITLDAARFEDEAFNLGEYVEDQIESVTFDRITTQTAKQVIVQK 117
           RW +V +   + +P ++I +  AR +D    L E+VE+QIESV F RI  Q AKQVI+QK
Sbjct: 61  RWLVVPDEQGLQEPDKQILMFEAREQDPDIQLDEFVEEQIESVEFGRIGAQAAKQVILQK 120

Query: 118 VREAERAMVVDQFREQEGEIITGVVKKVNRDNISLDLGSNAEAVILREDMLPRENFRPGD 177
           +R+AER  +++ + ++  +++TG VK+ ++  + ++ G   EA++ R+ ++P+EN R GD
Sbjct: 121 IRDAEREQILNDYLDRGEKVMTGTVKRADKKGLIVESG-RVEALLARDQIIPKENLRTGD 179

Query: 178 RIRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEELIEIKAAARDPGSRAKIA 237
           R+R  + +V   ARG Q+ ++R+ PE LI+LF  EVPE+ + L+EIKAAARDPG RAKIA
Sbjct: 180 RVRAYILNVDRTARGPQIELSRTAPEFLIKLFENEVPEMEQGLLEIKAAARDPGVRAKIA 239

Query: 238 VKTNDKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIV 297
           V  +DKRIDP+G CVG+RG RV AV +E+GGE +DIVLW ++PAQFVI A+APA V SIV
Sbjct: 240 VVAHDKRIDPIGTCVGVRGTRVTAVRNEIGGEAVDIVLWSEDPAQFVIGALAPAQVQSIV 299

Query: 298 VDEDNHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAID 357
           VDE+ H+MD+ V+  NLA AIGR+GQNVRLAS+L+GW++N+MT ++   K   E+     
Sbjct: 300 VDEEKHSMDVVVDEENLAVAIGRSGQNVRLASELTGWQINIMTQEESAQKQAEESDVVRK 359

Query: 358 MFTKHLDIDEEFATVLVEEGFSSLEELAYVPINELLEVDGLDEETIEALRERAKNALTTL 417
           +F   LD+DEE A +L++EGFS+LEE+AYVPI+E+LE+D  DE+T+  LR RA++AL T+
Sbjct: 360 LFMAKLDVDEEVADILIDEGFSTLEEVAYVPISEMLEIDAFDEDTVNELRNRARDALLTM 419

Query: 418 ALAKEESLGNQEPAEDLLNLEGLDRALAFRLASKGVCTLEDLAEQGVDDLTDIEGLSDEQ 477
            LA+EE +  +E ++DL +L+GL   L  +LA   + T ++LAE  VD+L D+ GL ++ 
Sbjct: 420 ELAREEKV--EEVSQDLRSLDGLTPELIGKLAEGNIHTRDELAELAVDELVDMVGLGEDD 477

Query: 478 AGALIMAARNICWF 491
           A ALIM AR   WF
Sbjct: 478 ARALIMKARE-HWF 490