Pairwise Alignments

Query, 495 a.a., transcription termination/antitermination protein NusA from Pantoea sp. MT58

Subject, 548 a.a., N utilization substance protein A NusA from Caulobacter crescentus NA1000

 Score =  370 bits (951), Expect = e-107
 Identities = 208/506 (41%), Positives = 314/506 (62%), Gaps = 27/506 (5%)

Query: 4   EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIEVRVSIDRRSGDFDTFRRWE 63
           E+L + +AV+ EK + +E + EA+E AL  A + +Y  E ++RV ID ++G+    R  E
Sbjct: 11  ELLQIADAVAREKGIEKEVVIEAIEDALQKAARARYGAEHDIRVKIDPKTGETTQKRVIE 70

Query: 64  IVEEVTQPTREI---TLDAARFEDEAFNLGEYVEDQIESVTFDRITTQTAKQVIVQKVRE 120
           +V +  +   EI       A+       +G+  E+ +      R+ TQ A+QV++ KVRE
Sbjct: 71  VVSDDAELEGEIGKMPFSIAKRTWRDAEIGKVYEEVLPPFEIGRVQTQMARQVVMHKVRE 130

Query: 121 AERAMVVDQFREQEGEIITGVVKKVNRDNISLDLGSNAEAVILREDMLPRENFRPGDRIR 180
           AER    D+++++ GEI+ G VK+V   N+ +DLG   E ++ R+  +PRENF  GDRIR
Sbjct: 131 AERERQYDEYKDRVGEIVNGSVKRVEYGNVIVDLG-RGEGIMRRDQSIPRENFNVGDRIR 189

Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKT 240
             +Y VR E +G Q+ ++R+    + +LF  EVPE+ + +IEI+A ARDPGSRAK+AV +
Sbjct: 190 AYIYDVRRETKGPQIMLSRAHGGFMAKLFAQEVPEVYDGVIEIRAVARDPGSRAKMAVIS 249

Query: 241 NDKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300
           ND  IDPVGACVGMRG+RVQAV +EL GE+IDI+ W ++ A F++NA+APA+V+ +V+DE
Sbjct: 250 NDGSIDPVGACVGMRGSRVQAVVAELQGEKIDIIQWSEDEATFIVNALAPAEVSKVVMDE 309

Query: 301 DNHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDMFT 360
           ++  +++ V    L+ AIGR GQNVRLASQL+GW++++MT      + Q E      +F 
Sbjct: 310 EDERVEVVVPDEQLSLAIGRRGQNVRLASQLTGWQIDIMTESQESERRQREFAERTALFQ 369

Query: 361 KHLDIDEEFATVLVEEGFSSLEELAYVPINELLEVDGLDEETIEALRERAKNALTTLAL- 419
           + LD+DE  A +LV EGF+++E++AYV  +E+  ++G DEET E L+ RA+  L   A  
Sbjct: 370 EALDVDEVIAQLLVTEGFAAVEDVAYVEPHEIASIEGFDEETAEELQTRAREFLEKEAAE 429

Query: 420 --AKEESLGNQEPAEDLLNLEGLDRALAFRLASKGVCTLEDLAEQGVDD----------- 466
             AK ++LG +   ++LL +EG+  A+A  L    V ++EDLA    DD           
Sbjct: 430 LDAKRKALGVE---DELLTIEGVTLAMAVALGEGDVKSIEDLAGLVPDDMRGWFENKGGE 486

Query: 467 ------LTDIEGLSDEQAGALIMAAR 486
                 + +   LS E A ALIM AR
Sbjct: 487 RVREPGILESFNLSPEDAEALIMRAR 512