Pairwise Alignments

Query, 495 a.a., transcription termination/antitermination protein NusA from Pantoea sp. MT58

Subject, 491 a.a., transcription termination factor NusA from Burkholderia phytofirmans PsJN

 Score =  483 bits (1243), Expect = e-141
 Identities = 244/494 (49%), Positives = 357/494 (72%), Gaps = 7/494 (1%)

Query: 1   MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIEVRVSIDRRSGDFDTFR 60
           M++E+L +V+A++ EK + ++ +F ALE+ALA+A+KK +E++ ++RV IDR SG+ +TFR
Sbjct: 1   MSREVLMLVDALAREKNVDKDVVFAALEAALASASKKLFEEDADIRVQIDRESGEHETFR 60

Query: 61  RWEIVEE---VTQPTREITLDAARFEDEAFNLGEYVEDQIESVTFDRITTQTAKQVIVQK 117
           RW++V +   + +P +EI L  AR +     L E++E+ + S+ F RI  Q AKQVI+QK
Sbjct: 61  RWKVVPDEAGLQEPDQEILLFEAREQKPEIQLDEFIEEPVPSIEFGRIGAQAAKQVILQK 120

Query: 118 VREAERAMVVDQFREQEGEIITGVVKKVNRDNISLDLGSNAEAVILREDMLPRENFRPGD 177
           VR+AER  +++ F E+   I+TG VK++++ N  ++ G   EA++ R+ ++P+EN R GD
Sbjct: 121 VRDAEREQILNDFLERGEHIMTGSVKRLDKGNFIVETG-RVEALLRRDQLIPKENLRVGD 179

Query: 178 RIRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEELIEIKAAARDPGSRAKIA 237
           R+R  +  V   ARG Q+ ++R+ PE L++LF +EVPEI + L+EIKAAARDPG RAKI 
Sbjct: 180 RVRAYIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIG 239

Query: 238 VKTNDKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIV 297
           V   DKRIDP+G CVG+RG+RVQAV +ELGGE +DIVLW ++PAQFVI A+APA V SIV
Sbjct: 240 VVAYDKRIDPIGTCVGIRGSRVQAVRNELGGENVDIVLWSEDPAQFVIGALAPAAVQSIV 299

Query: 298 VDEDNHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAID 357
           VDE+ H+MD+ V+   LA AIGR+GQNVRLAS+L+GW++N+MT D+   K   E     D
Sbjct: 300 VDEEKHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQNQERGVLRD 359

Query: 358 MFTKHLDIDEEFATVLVEEGFSSLEELAYVPINELLEVDGLDEETIEALRERAKNALTTL 417
           +F   LD+DEE A +L++EGF+SLEE+AYVP+NE+LE++  DE+T+  LR R+++AL T 
Sbjct: 360 LFMARLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRSRDALLTQ 419

Query: 418 ALAKEESLGNQEPAEDLLNLEGLDRALAFRLASKGVCTLEDLAEQGVDDLTDIEGLSDEQ 477
           A+A EE + N   A DL +L+G+D  L  +LA   + T ++LAE  VD+L ++ G+ ++ 
Sbjct: 420 AIANEEKVEN--VALDLKSLDGMDADLLAKLAEHQIQTRDELAELAVDELVEMTGMEEDA 477

Query: 478 AGALIMAARNICWF 491
           A ALIM AR   WF
Sbjct: 478 AKALIMKARE-HWF 490