Pairwise Alignments

Query, 850 a.a., type VI secretion system ATPase TssH from Pantoea sp. MT58

Subject, 862 a.a., endopeptidase Clp ATP-binding chain B (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  503 bits (1296), Expect = e-146
 Identities = 311/879 (35%), Positives = 482/879 (54%), Gaps = 77/879 (8%)

Query: 12  FSADARYCLNAAVSQAVSRTHHEVSVEHLLLALITTQTVLLEQLCLGAGLRGDQLADALT 71
           F+  ++  +  AV+   SR    +   H+L  ++     +   +    G+ G Q+A  + 
Sbjct: 6   FTIKSQEAVQEAVNLVQSRGQQAIEPAHILHGVMKVGENVTNFIFQKLGMNGQQVALVVD 65

Query: 72  HSLNQQRSGNTCGPVLSESLVRHLEKAWLHASICWHQRHLPATAFIGCLLADPDDVTLPL 131
             +      +   P LS      L+KA  ++     +  +     +  LL     V+  L
Sbjct: 66  KQIESLPKVSGGEPYLSRESNEVLQKATQYSKEMGDE-FVSLEHILLALLTVKSTVSTIL 124

Query: 132 PT------EVRQALHCDVLKADALMAEYSGTGQKKDNTEEGVPSGGPALLKYTHNLTQKA 185
                   E+R A++ ++ K + + ++ S     +DN +        +L KY  NL + A
Sbjct: 125 KDAGMTEKELRNAIN-ELRKGEKVTSQSS-----EDNYQ--------SLEKYAINLNEAA 170

Query: 186 RRGELDPATGRENEIRQMIDVLLRRRQNNPILTGEPGVGKTALVEGLAQRIVSGTVPDAL 245
           R G+LDP  GR+ EIR+++ +L RR +NNPIL GEPG GKTA+VEGLA RI+ G VP+ L
Sbjct: 171 RSGKLDPVIGRDEEIRRVLQILSRRTKNNPILIGEPGTGKTAIVEGLAHRILRGDVPENL 230

Query: 246 KKMDIMSLDLSLLQAGASVKGEFENRLQSLLCDIQSHPVPIILFIDEAHMLVGAGGTAGQ 305
           K   + SLD+  L AGA  KGEFE RL+S++ +++     IILFIDE H LVGAG   G 
Sbjct: 231 KNKQVYSLDMGALVAGAKYKGEFEERLKSVVNEVKKSEGDIILFIDEIHTLVGAGKGEGA 290

Query: 306 NDAANLLKPALARGELRMIGATTWSEYKKYFEKDAALARRFQIVRVTEPDRDTAINMLRS 365
            DAAN+LKPALARGELR IGATT  EY+KYFEKD AL RRFQIV+V EPD  + I++LR 
Sbjct: 291 MDAANILKPALARGELRSIGATTLDEYQKYFEKDKALERRFQIVQVDEPDTLSTISILRG 350

Query: 366 IVPAISSHHGIPVPDSAIVAAVEFSARYLPGRQLPDKSVTLLDTACARVALSQSDEPREI 425
           +     +HH + + D AI+AAVE S+RY+  R LPDK++ L+D A A++ +     P E+
Sbjct: 351 LKERYENHHHVRIKDDAIIAAVELSSRYITDRFLPDKAIDLMDEAAAKLRMEVDSVPEEL 410

Query: 426 EDLNVMLRNISLERRSLSLDSGCATRIAWLDQRKAEIKQDLTILTPVWKEQQSLVARIAQ 485
           ++++  ++ + +ER ++  ++    ++  + +  AE+K+        W+ +++L+ +I Q
Sbjct: 411 DEISRKIKQLEIEREAIKREND-KPKLEIIGKELAELKEVEKSFKAKWQSEKTLMDKIQQ 469

Query: 486 -----------CQNSEQQA---------------------SLRQKLSVMHKQQPMVFERV 513
                       + +E++                        ++KL  M   + M+ E V
Sbjct: 470 NKVEIENLKFEAEKAEREGDYGKVAEIRYGKLQALDKEIEDTQEKLRGMQGDKAMIKEEV 529

Query: 514 DAACVAEIIAGWTGIPVEQILEQKQGPLNTLYERLCERVTGQSHALEAIVRQIRTSRAGL 573
           DA  +A++++ WTGIPV ++++ ++  L  L + L +RV GQ  A+EA+   +R SRAGL
Sbjct: 530 DAEDIADVVSRWTGIPVSKMMQSEKDKLLHLEDELHQRVIGQDEAIEAVADAVRRSRAGL 589

Query: 574 ADPLKPMGVFMLAGPSGTGKTETALALAEMLYGGSRGLITLNMSEYQEAHSVAGLKGSPP 633
            DP +P+G F+  G +G GKTE A ALAE L+     +  ++MSEYQE HSV+ L G+PP
Sbjct: 590 QDPKRPIGSFIFLGTTGVGKTELAKALAEFLFDDESMMTRIDMSEYQEKHSVSRLVGAPP 649

Query: 634 GYVGYGQGGVLTEAVRRQPYSVVLIDEVEKAHRDVIELFYQVFDKGVMEDSEGQTIDFRN 693
           GYVGY +GG LTEA+RR+PYSVVL DE+EKAH DV  +  QV D G + D++G+ ++F+N
Sbjct: 650 GYVGYDEGGQLTEAIRRKPYSVVLFDEIEKAHPDVFNILLQVLDDGRLTDNKGRVVNFKN 709

Query: 694 TFIILTSNLADDVIMAAGEKESPD-------------INALVRQIRPEFSRVFPAAFMGR 740
           T II+TSN+    I +  EK S               +N L + IRPEF        M  
Sbjct: 710 TIIIMTSNMGSSYIQSQMEKLSGSNKEEVIEETKKEVMNMLKKNIRPEFLNRIDETIM-- 767

Query: 741 LTLLPYLPLSAQALNNIINAKLRKISLRFSGRDGEKRSLSYSPAVVRYIADRCHVRQSGA 800
                +LPL+   +  I+  +++ +    +    E   L  + A + +++   +  + GA
Sbjct: 768 -----FLPLTETEIRQIVLLQIKGVQKMLAENGVE---LEMTDAALNFLSQVGYDPEFGA 819

Query: 801 RDVDTVINQSLLPLVTDYLLEADGSGNLHILVQVTGKDL 839
           R V   I + LL  ++  LL  +   +  I+V   G  L
Sbjct: 820 RPVKRAIQRYLLNDLSKKLLSQEVDRSKAIIVDSNGDGL 858