Pairwise Alignments

Query, 318 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase RluC from Pantoea sp. MT58

Subject, 313 a.a., ribosomal large subunit pseudouridine synthase D from Synechococcus elongatus PCC 7942

 Score =  146 bits (369), Expect = 6e-40
 Identities = 104/318 (32%), Positives = 167/318 (52%), Gaps = 32/318 (10%)

Query: 16  ENAGQRIDNFLRTQLKGVPKSMIYRIVRKGEVRVN-----KKRVKPEYKLEEGDEVRIPP 70
           E   +R+D +L  Q   + ++ + +++  G++RVN     +KR +P  +L +  E+ +PP
Sbjct: 11  EVPSERLDRWLAQQWPHLSRARLQKLIAAGQLRVNGEVCDQKRWQP--RLGDRLELEMPP 68

Query: 71  VRVAERDEDAVSPKLAKVASLADAILFEDESLLVMNKPSGTAVHGGSGLSFGVI------ 124
                    A++P+      +   IL+ED  LL++NK  G  VH  +G   G +      
Sbjct: 69  TEAI-----ALAPE-----EIPLDILYEDADLLIVNKAVGMVVHPAAGHDTGTLVHALLA 118

Query: 125 ---EGLRALRPEARFLELVHRLDRDTSGILLVAKKRSALRSLHEQLREKGMQKDYLALVR 181
              + L  +  E R   +VHRLD+DT+G ++VAK  +AL SL +Q+R+K  Q++YL +V 
Sbjct: 119 HCGDSLTGIGGEQR-PGIVHRLDKDTTGAMVVAKTEAALLSLQDQIRQKTAQREYLGVVF 177

Query: 182 GNWPSHLKVVQAPLLKNIL-QSGERVVRVSSEGKASETRFKVEERFDFATLVKASPVTGR 240
           G+       V+ P+ +++  +    VV +   G+ + T ++V ER     L+     TGR
Sbjct: 178 GSPRQDSGQVEEPIGRHLRDRKRMAVVPIERGGRWALTHWQVRERLGNYALLHYRLATGR 237

Query: 241 THQIRVHTLHAGHPIAFDDRYGERDFDSQLASTGLKRLFLHAAALTFTHPGTGEVMRVEA 300
           THQIRVH+ H GHP+  D  YG    + +     L+   LHA  L+  HP TGEV+ VEA
Sbjct: 238 THQIRVHSHHMGHPLVGDPLYG----NGRSLGVNLQGQALHAWRLSLQHPRTGEVIAVEA 293

Query: 301 PLDDGLKQCLNKLRQMKA 318
           PL    ++ L  LR   A
Sbjct: 294 PLPAEFQRLLRVLRDRSA 311