Pairwise Alignments

Query, 311 a.a., D-ribose ABC transporter substrate-binding protein from Pantoea sp. MT58

Subject, 334 a.a., sugar ABC transporter from Burkholderia phytofirmans PsJN

 Score =  100 bits (249), Expect = 5e-26
 Identities = 83/287 (28%), Positives = 133/287 (46%), Gaps = 5/287 (1%)

Query: 2   KKRTLLCTAVAACLVSQAAFAAEKGTIMILVNSLDNPYYASEAKGANLKAQELGYK--TT 59
           +K   +C A +A   + A+ AA++  + ++  +  NP++    +GA   A + G K  T 
Sbjct: 12  RKIVSMCVAASAVWCASASQAADQPVVGLITKTDTNPFFVKMKQGAEAAASKDGAKLITA 71

Query: 60  VLSHGEDVKKQSELIDAAIGKKVQGIVLDNADSTASVAAIKKAKDAGIPVVLINREIPVD 119
                 D   Q   I+  +    + I++  +D+ A V +IKKA+ AG+ VV ++      
Sbjct: 72  AGKFDGDNASQVTAIENMMTAGAKAILITPSDTKAIVPSIKKARAAGVMVVALDTPTDPQ 131

Query: 120 DVALAQITHNNFQAGSDVANVFVEKM-GEKGKYAELACNLADNNCVTRSKSFHQVLD-QY 177
           D   A    +NF+AG  +       + G+  K A L      +  V R   F +    + 
Sbjct: 132 DATDALFATDNFKAGVLIGKYAKAALNGKPAKIATLDLAPGVSVGVLRHNGFLEGFGVKE 191

Query: 178 PDMQSVARQDAKGTLIDGKRIMDSILQAHPDVKGVICGNGPVALGAIAALKAAGRN-DVI 236
            D   V  QD +G    G+  M++ LQ  PD+  V   N P A GA  ALKAAG++  V+
Sbjct: 192 GDPSVVCSQDTRGDQAKGQTAMENCLQKSPDINVVYTINEPAAAGAYRALKAAGKDKSVM 251

Query: 237 VVGIDGSNDERDAVKAGTLKATVMLQAQAIAAEGVTDLDNFIQKGVK 283
           +V IDG  +    VKAG + AT       +A+ GVT    + + G K
Sbjct: 252 IVSIDGGCEGVRNVKAGAIAATSQQYPLKMASLGVTAGVEYAKTGKK 298



 Score = 27.3 bits (59), Expect = 5e-04
 Identities = 26/89 (29%), Positives = 34/89 (38%), Gaps = 3/89 (3%)

Query: 219 VALGAIAALKAAGRNDVIVVGIDGSNDERD---AVKAGTLKATVMLQAQAIAAEGVTDLD 275
           VA  A+    A+   D  VVG+    D       +K G   A     A+ I A G  D D
Sbjct: 19  VAASAVWCASASQAADQPVVGLITKTDTNPFFVKMKQGAEAAASKDGAKLITAAGKFDGD 78

Query: 276 NFIQKGVKPEKQRVMFRGILITPENAKNV 304
           N  Q            + ILITP + K +
Sbjct: 79  NASQVTAIENMMTAGAKAILITPSDTKAI 107