Pairwise Alignments

Query, 261 a.a., flagellar type III secretion system protein FliR from Pantoea sp. MT58

Subject, 228 a.a., Flagellar biosynthesis pathway, component FliR from Pseudomonas stutzeri RCH2

 Score =  115 bits (288), Expect = 8e-31
 Identities = 69/253 (27%), Positives = 126/253 (49%), Gaps = 32/253 (12%)

Query: 4   LDSSQLVHWVSQFFWPLVRIMALFATAPILNERSISKRVKIGLAVMITWLVMPLLPAVNV 63
           + + Q +  +  ++WP  RIMA+F+ AP+ N ++IS RV+I LA+ +T            
Sbjct: 1   MHAGQYLQSLLAYWWPFCRIMAVFSLAPMFNHKAISVRVRILLALALT------------ 48

Query: 64  TLFSPPGFLLLIQQMLIGIALGFTMQFAFAAVRLAGEVIGLQMGISFATFFDPGSRL-NM 122
                             + LG  +   F    L G+V+  Q+G+S A F DP + + + 
Sbjct: 49  ------------------LVLGLALLLVFTVFTLIGDVVSTQLGLSMAVFNDPMNGVSSA 90

Query: 123 PVLARFLDMLAMLLFLSFNGHLWLISLLVDSFHTLPIGGEPINANAFMALVKSGGLIFLN 182
            ++ +   +L  LLF + +GHL  +S++  SF   PI G  +  +    +  S   +   
Sbjct: 91  SIIYQLYFILLALLFFAVDGHLVTVSIIYQSFVYWPI-GSGLFYDGLQTIAWSMAWVISA 149

Query: 183 GMMLALPLIVLLLMVNLVLGLLNRVSPQLSIFAIGFPITLSVGILTISLLMPLLAPFCER 242
            +++ALP++  + +V    GLLNR+SP +++F++GFP+ +  G+  I L +P  A     
Sbjct: 150 ALLIALPIVFCMTLVQFCFGLLNRISPAMNLFSLGFPMAILAGLSLIYLTLPNFAEAYLH 209

Query: 243 LFGEIFDLLALFL 255
           L  ++ D + + L
Sbjct: 210 LTRDLLDKIGVLL 222