Pairwise Alignments

Query, 460 a.a., tRNA 5-hydroxyuridine modification protein YegQ from Pantoea sp. MT58

Subject, 609 a.a., putative collagenase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  145 bits (366), Expect = 4e-39
 Identities = 130/457 (28%), Positives = 192/457 (42%), Gaps = 91/457 (19%)

Query: 3   KPELLSPAGTLKNMRYAFAYGADAVYAGQPRYSLRVRNNEFTHENLALGINEAHALGKKF 62
           K ELL+PA  L+    A  +GADAVY G P++  R        +  AL +  AH    + 
Sbjct: 6   KIELLAPAKNLECGIEAINHGADAVYIGAPKFGARAAAVNSLEDIEAL-VKHAHLYNARI 64

Query: 63  YVVVNIAPHNAKLKTFIRDLAPVVEMQPDALIMSDPGLIMLVREAFPTMPIHLSVQANAV 122
           YV VN      +LK     +  +  +  DALI+ D G+  L     P +P+H S Q +  
Sbjct: 65  YVTVNTILKEEELKETEEMIHALYRVGVDALIVQDMGITKL---NLPPIPLHASTQMDNR 121

Query: 123 NWATVKFWQQMGLSRVILSRELSLEEIGEIRQQVPEMELEVFVHGALCMAYSGRCLLSGY 182
               VKF  + G  +V+L+RELS+ EI +I +  PE+ LEVFVHGALC++YSG+C +S  
Sbjct: 122 TPEKVKFLWEAGFRQVVLARELSIREIRKIHEICPEVPLEVFVHGALCVSYSGQCYVSQA 181

Query: 183 MNKRDPNQGTCTNACRWEYKVQEGQQDEVGNIVGIHTPVAVQDVTPVLGIGQPTDKVFLL 242
              R  N+G C   CR  + +     D  G ++                           
Sbjct: 182 CFGRSANRGECAQFCRLPFSL----VDSEGKVI--------------------------- 210

Query: 243 EEKMKPGDVMSAFEDEHGTYIMNSRDLRAVAHVERLSEMGVHSLKIEGRTKSYYYCARTA 302
                        +D+H   +++ +D+     +ERL + G  S KIEGR K   Y     
Sbjct: 211 ------------VKDKH---LLSLKDMNQSDELERLLDAGASSFKIEGRLKDVSYVKNVT 255

Query: 303 QVYRRAIDDAAAGKP-------------FDPSLLLTLEGLAHRGYTEGFLRRHTHDSYQN 349
             YR+ +D   A +P             F P     L+    RG+T  FL   + D +  
Sbjct: 256 AAYRQKLDAIFARRPEYVRASSGTCRFDFKPQ----LDKSFSRGFTHYFLHGRSEDIFS- 310

Query: 350 YQQGFSVSDRQQFVGEFTG---ERRGEWAEVAVKNKFMLHDSVEIMTPEGNLNCQLDALQ 406
                   D  + +GE  G   E RG +  VA    F   D V          C +D  +
Sbjct: 311 -------FDTPKSLGEEMGTMKEARGNFLTVAGLKSFNNGDGV----------CYID--E 351

Query: 407 NARGEPTEVAPGDGHRVWLQVPQEVDLRFALLLRNFD 443
             R +   +   DG++++ Q    +  R   L RNFD
Sbjct: 352 QGRLQGFRINRVDGNKLYPQEMPRIKPR-TKLYRNFD 387