Pairwise Alignments

Query, 330 a.a., RNA polymerase sigma factor RpoS from Pantoea sp. MT58

Subject, 331 a.a., RNA polymerase, sigma 70 subunit, RpoD family from Marinobacter adhaerens HP15

 Score =  412 bits (1059), Expect = e-120
 Identities = 212/318 (66%), Positives = 255/318 (80%), Gaps = 3/318 (0%)

Query: 15  AEFDENGAEIFDEKALVENEASDSDVAEEELLSQG---ATQRVLDATQLYLGEIGYSPLL 71
           ++ D+   ++  E+ + +    +    EE++ +QG    +Q+ LDATQLYL EIG+SPLL
Sbjct: 14  SDMDDAEDQLLAEEKVEKEPTEEVAEVEEDIPTQGRYFTSQKQLDATQLYLNEIGFSPLL 73

Query: 72  TAEEEVFFARRALRGDIPSRRRMIESNLRLVVKIARRYSNRGLALLDLIEEGNLGLIRAV 131
           T EEEV+FAR A +G+   R+RMIESNLRLVVKIARRY NRGL LLDLIEEGNLGLIRAV
Sbjct: 74  TPEEEVYFARLARKGEESGRKRMIESNLRLVVKIARRYVNRGLTLLDLIEEGNLGLIRAV 133

Query: 132 EKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDH 191
           EKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIH+VKELN+YLR AREL+ KLDH
Sbjct: 134 EKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNLYLRAARELTQKLDH 193

Query: 192 EPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKDNGPEDTTQ 251
           EPSAEEIA  +DKPV DV RML LNER+ S+DTP+G   EK+LLD +ADE  + P D  Q
Sbjct: 194 EPSAEEIARMVDKPVADVKRMLGLNERVASMDTPIGAGGEKSLLDTVADEGASDPADLLQ 253

Query: 252 DDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLR 311
           D++M   + KW+ +L+ KQ+EVL+RRFGL GY  +TLE+VG+EIGLTRERVRQIQVE LR
Sbjct: 254 DNNMCSCLEKWIDQLSDKQQEVLSRRFGLRGYPVSTLEEVGQEIGLTRERVRQIQVEALR 313

Query: 312 RLREILQAQGLSIEALFR 329
           RLREIL+ +GLS   LF+
Sbjct: 314 RLREILEKEGLSGNLLFK 331