Pairwise Alignments

Query, 330 a.a., RNA polymerase sigma factor RpoS from Pantoea sp. MT58

Subject, 590 a.a., RNA polymerase sigma-70 factor (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  223 bits (569), Expect = 7e-63
 Identities = 107/249 (42%), Positives = 175/249 (70%)

Query: 74  EEEVFFARRALRGDIPSRRRMIESNLRLVVKIARRYSNRGLALLDLIEEGNLGLIRAVEK 133
           EE ++  +R     + +++ +I SNLRLVV IA++Y+NRGL  LDLI+EGN+GL++AV+K
Sbjct: 336 EEVLWRIKRGNSIAMRAKQELIRSNLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDK 395

Query: 134 FDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEP 193
           F+ +RG++FSTYATWWIRQ I RAI +Q RTIR+P+H+++ +N  +RT+R L  +L  +P
Sbjct: 396 FEYQRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQELGRDP 455

Query: 194 SAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKDNGPEDTTQDD 253
           + EEIAE++D P+D V ++L++ +   S++TP+G + + +L D + D+K   P +   + 
Sbjct: 456 TPEEIAERMDYPIDKVKKVLKIAKEPISLETPIGDEEDSSLGDFIEDKKAVAPAEEVVNT 515

Query: 254 DMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRL 313
            + + I   L +L  ++ +VL +RFG+      TLE+VG+   +TRER+RQI+ + LR+L
Sbjct: 516 KLGEQIASVLADLTPREEQVLRKRFGIGEKSDHTLEEVGKLFNVTRERIRQIEAKALRKL 575

Query: 314 REILQAQGL 322
           R  +++Q L
Sbjct: 576 RHPVRSQTL 584



 Score = 32.0 bits (71), Expect = 4e-05
 Identities = 47/227 (20%), Positives = 90/227 (39%), Gaps = 56/227 (24%)

Query: 24  IFDEK--ALVENEASDSDVA------EEELLSQGA------------TQRVLDATQLYLG 63
           IFD+   A+V++E     ++      EEE  S+G             + R  D  ++YL 
Sbjct: 48  IFDQLDIAIVDSEKDGKKISMSPGESEEEAPSEGGLDLSDDEETVDYSSRSTDPVRMYLR 107

Query: 64  EIGYSPLLTAEEEVFFARRALRGDIPSRRRMIESNLRL--VVKIARRYSNRGLALLDLIE 121
           E+G  PLL  + EV  A++   G+      ++E  + +  +V +        + L D   
Sbjct: 108 EMGSVPLLDRDGEVVIAKKIEMGEQDVLYALVEVPVAVEELVNVGEDLKQNRIKLKD--- 164

Query: 122 EGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRT 181
                +++ +E+ DP                      MNQ + +   I +++E+    + 
Sbjct: 165 -----VVKTIEEDDPSED------------------EMNQRQRV---ILLLEEIRTTFKK 198

Query: 182 ARELSHKLDHEPSAEEIAEQLDKPV-----DDVSRMLRLNERITSVD 223
            R++  KLD   + E     + + +     D VSR+  +    T +D
Sbjct: 199 KRKVYSKLDECCTLERRVASVQREIMNYKEDIVSRLRDIKLEKTLID 245