Pairwise Alignments

Query, 802 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit B from Pantoea sp. MT58

Subject, 645 a.a., DNA gyrase subunit B from Synechococcus elongatus PCC 7942

 Score =  579 bits (1493), Expect = e-169
 Identities = 297/563 (52%), Positives = 393/563 (69%), Gaps = 10/563 (1%)

Query: 1   MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCSDIV 60
           M+N Y +S I+VL+GL+ VRKRPGMYIG T    GLHH+V+EVVDNA+DEALAG+C+ I 
Sbjct: 1   MANEYGASQIQVLEGLEPVRKRPGMYIGSTGP-KGLHHLVYEVVDNAVDEALAGYCNTID 59

Query: 61  VTIHADNSVSVQDDGRGIPTGIHEEEGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120
           V +  D S  V D+GRGIPT IH + G SA E ++T+LHAGGKF    YKVSGGLHGVGV
Sbjct: 60  VRLLEDGSCQVTDNGRGIPTDIHPQTGKSALETVLTILHAGGKFGGGGYKVSGGLHGVGV 119

Query: 121 SVVNALSQKLELTIRREGKVHQQVYVHGVPQSPLAVTGETDIT-GTRVRFWPSHETFTNV 179
           SVVNALS+ +E+T+ REGK HQQ +  G P   L V  + D   GT+VRF P    F+  
Sbjct: 120 SVVNALSEYVEVTVWREGKTHQQRFEQGNPIGELQVAPDADDRRGTQVRFKPDATIFSET 179

Query: 180 RDFEYDILAKRLRELSFLNSGVSIRLEDKR-------DGKNDHFHYEGGIRAFVEYLNKN 232
            +F+Y  LA RL+EL++LN+GV I   D+R       +   + +++EGGIR +V Y+N +
Sbjct: 180 TEFDYGTLASRLKELAYLNAGVRIDFTDERLQLTKNHEPHQETYYFEGGIREYVAYMNTD 239

Query: 233 KTPIHPTVFYFSTEKDGIGVEVALQWN-DGFQENIYCFTNNIPQRDGGTHLAGFRAAMTR 291
           K  +H  + +  +EKDG+ VE ALQW  D + +NI  F NNI   DGGTH+ G +  +TR
Sbjct: 240 KQALHSEIIFVQSEKDGVQVEAALQWCVDAYSDNILGFANNIRTIDGGTHIEGLKTVLTR 299

Query: 292 TLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQ 351
           T+N    K    K A  + +G++ REGL A+VSVKVPDP+F  QTK KL ++EV+  V+ 
Sbjct: 300 TMNTIARKRNKRKDADNNLSGENIREGLTAIVSVKVPDPEFEGQTKTKLGNTEVRGIVDT 359

Query: 352 QMNELLAEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQ 411
            + E L EYL  +PS A +++ K I A  A EAARRARE+ RRK  L+ + LPGKLADC 
Sbjct: 360 LVGETLTEYLEFHPSVADLILEKAIQAFNAAEAARRARELVRRKSVLESSTLPGKLADCS 419

Query: 412 ERDPALSEIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLASQEVATLI 471
            RDP  SEI++VEGDSAGGSAKQGR+R+ QAILPL+GKILN+EK    K+  + E+  LI
Sbjct: 420 SRDPGESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQALI 479

Query: 472 TALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYIAQ 531
           TALG GI  +E++  +LRYH I+IMTDADVDG+HIRTLLLTFFYR    ++E+G++YIA 
Sbjct: 480 TALGLGIKGEEFDASQLRYHRIVIMTDADVDGAHIRTLLLTFFYRYQRSLLEQGYIYIAC 539

Query: 532 PPLYKVKKGKQEQYIKDDEAMDQ 554
           PPLYK+++G+   Y  ++  + +
Sbjct: 540 PPLYKLERGRNHYYCYNERELQE 562



 Score = 88.6 bits (218), Expect = 1e-21
 Identities = 52/109 (47%), Positives = 68/109 (62%), Gaps = 12/109 (11%)

Query: 696 RGLLEEDAYIERGERRQPVASFEQAIEWLVKESRRGLSVQRYKGLGEMNPDQLWETTMDP 755
           RG      Y ER E ++ +A+F +   +         ++QR+KGLGEM P QLWETTMDP
Sbjct: 547 RGRNHYYCYNER-ELQERIATFPENANY---------TIQRFKGLGEMMPQQLWETTMDP 596

Query: 756 DSRRMLRVTIKDAIGADQLFTTLMGDAVEPRRAFIEENA--LKAANIDI 802
           ++R M RV I+DA  AD++FT LMGD V+PRR FIE     L  A +DI
Sbjct: 597 ETRTMKRVEIEDAAEADRIFTILMGDRVQPRREFIETYGPQLSMAALDI 645