Pairwise Alignments

Query, 105 a.a., hypothetical protease with the C-terminal PDZ domain (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 600 a.a., peptidase M61 from Herbaspirillum seropedicae SmR1

 Score = 40.4 bits (93), Expect = 3e-08
 Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 14/114 (12%)

Query: 6   FRQDPVSVQLSVPEN-----WQSYSGMSSGPVAHF----FIAPNYDVLIDSPIETGTSTH 56
           F Q    V+L  PE      W+  + MS      +    ++A NYD LID P+E G    
Sbjct: 124 FEQGEHVVELVRPEGEEFKRWRVATAMSELKAKRYGFGTYVAQNYDELIDHPVEIGDFAL 183

Query: 57  KKFTANGKDYELLFWGE-GNYDADKVVKDLTALSGQAKAIWD----EYPFERYV 105
             F A+G  ++++  G   N D  ++ +DL  +     A ++      P +RYV
Sbjct: 184 ATFQAHGVPHDVVITGRVPNLDLARLCEDLKKICEAQIAFFEPRSKRAPMDRYV 237