Pairwise Alignments

Query, 161 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 427 a.a., PqiA family integral membrane protein (RefSeq) from Shewanella sp. ANA-3

 Score = 61.2 bits (147), Expect = 2e-14
 Identities = 41/158 (25%), Positives = 73/158 (46%), Gaps = 15/158 (9%)

Query: 3   ALCITALVFYFPANFFPVLEIHFLGSIRTTTVFQGAFAVFDQGYWVVGIAVLAAAVVGPG 62
           A  + A VFY PANF+P++    +G    +T+  G   ++  G + V   +  A++V P 
Sbjct: 268 AFLLAATVFYIPANFYPIMYTTSVGQTEASTIISGVVLLWHLGSYPVASIIFFASIVIPT 327

Query: 63  LLILSILIQLLIVKWGLDSPLGR-HSLKQLLKFQGL------LSQLTMLEIYVISFLVSS 115
             I S+          L    G+ HS  Q +K Q L      + + +M++I+V++ L + 
Sbjct: 328 AKIASLAY--------LFRQAGKAHSSDQAIKNQQLYRVTEFIGRWSMIDIFVVALLTAL 379

Query: 116 FQLSDFSDIYFGMGTFCFTMLFLVTLFLQREYDIEHMW 153
            QL +   I  G     F M+ ++T+     +D   +W
Sbjct: 380 VQLDELMAIKPGPAALSFAMVVILTMLSAIAFDSRVLW 417