Pairwise Alignments

Query, 673 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1092 a.a., histidine kinase from Pseudomonas fluorescens FW300-N2C3

 Score = 65.9 bits (159), Expect = 1e-14
 Identities = 46/190 (24%), Positives = 93/190 (48%), Gaps = 10/190 (5%)

Query: 485 KVAEKTMALSKEIARNQAFQATLVESEEKYRNLFDKAPVGHVLKRLEDSQFVAINQAFTE 544
           ++A   + ++ ++ R Q+  A    SEEK+  LF  +P    +   +  +F+ IN +FT+
Sbjct: 389 RMAGTLLDITDQVEREQSLAA----SEEKFATLFQVSPDPICVTHQDSGRFLEINSSFTQ 444

Query: 545 ITGYTLEELQALEPWDLTPVRYRASEAEQLERLKQTHRYGPYQKHYRHKDGRLVAVRLNG 604
             G+T  ++  L   ++       S  +++ER+ +            HK+G+ +   ++ 
Sbjct: 445 TFGWTTNDVIGLSADEIGLWGGSGSSLQRIERVIREQSLNNVAIVVHHKNGQPLTCVISS 504

Query: 605 SLVTAANGEPLILFVVEDITEQERTVARVNL----LAQVFQQSGEGITIID-ANDIIVDV 659
             +   N +P I+  + DIT+Q+R+ A +       A+ F  S + ITI +  +   ++V
Sbjct: 505 RQINVGN-QPCIVTTLRDITQQQRSEAALKASEEKFAKAFHSSPDAITITEHQSGRYLEV 563

Query: 660 NSAFTQITGY 669
           N  F ++TGY
Sbjct: 564 NDGFCRLTGY 573



 Score = 46.2 bits (108), Expect = 8e-09
 Identities = 32/143 (22%), Positives = 63/143 (44%), Gaps = 1/143 (0%)

Query: 495 KEIARNQAFQATLVESEEKYRNLFDKAPVGHVLKRLEDSQFVAINQAFTEITGYTLEELQ 554
           ++I + Q  +A L  SEEK+   F  +P    +   +  +++ +N  F  +TGY  +E+ 
Sbjct: 520 RDITQQQRSEAALKASEEKFAKAFHSSPDAITITEHQSGRYLEVNDGFCRLTGYRADEVI 579

Query: 555 ALEPWDLTPVRYRASEAEQLERLKQTHRYGPYQKHYRHKDGRLVAVRLNGSLVTAANGEP 614
               +++         A  L  L+   R    +   R+K G ++ V ++   +T    E 
Sbjct: 580 GHTVYEVGIWAEEKQRAALLAELQLKGRVHHQEMLGRNKRGEILTVEVSVEPITLNETEC 639

Query: 615 LILFVVEDITEQERTVARVNLLA 637
           L+L    D++      A++  LA
Sbjct: 640 LLL-TARDVSLLRNAEAQIRHLA 661



 Score = 34.3 bits (77), Expect = 3e-05
 Identities = 29/139 (20%), Positives = 59/139 (42%), Gaps = 1/139 (0%)

Query: 489 KTMALSKEIARNQAFQATLVESEEKYRNLFDKAPVGHVLKRLEDSQFVAINQAFTEITGY 548
           + + + +EI   +  +  L  SE+++  LF   P   +L R ED      NQ F  + G+
Sbjct: 135 RMIGVIREITHQREREQALRSSEKRFATLFHLCPNMVLLTRQEDGLISEANQYFESLFGW 194

Query: 549 TLEELQALEPWDLTPVRYRASEAEQLERLKQTHRYGPYQKHYRHKDGRLVAVRLNGSLVT 608
            + ++      +L         A+ +E  K        +  +R  +G++ +  L+   V 
Sbjct: 195 PVHDVIGRTTLELGLWVDPRQRAKLVEATKAKGELVSMEVEFRASNGQIHSGILSAQKV- 253

Query: 609 AANGEPLILFVVEDITEQE 627
              G+P +L    D +E++
Sbjct: 254 ELEGQPYLLSTFLDTSERK 272



 Score = 26.6 bits (57), Expect = 0.007
 Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 4/46 (8%)

Query: 585 PYQKHYRHK----DGRLVAVRLNGSLVTAANGEPLILFVVEDITEQ 626
           P ++   H+    DG L  + ++GS++   +G P ++ V+ +IT Q
Sbjct: 101 PVEQAMHHRIVWPDGSLHWLEISGSVLPDKHGRPRMIGVIREITHQ 146