Pairwise Alignments

Query, 673 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1247 a.a., diguanylate cyclase from Pseudomonas fluorescens FW300-N2C3

 Score = 78.6 bits (192), Expect = 2e-18
 Identities = 51/176 (28%), Positives = 83/176 (47%), Gaps = 1/176 (0%)

Query: 495 KEIARNQAFQATLVESEEKYRNLFDKAPVGHVLKRLEDSQFVAINQAFTEITGYTLEELQ 554
           ++I++ +  Q  L  SEEK+   F  +P G +L R  D   + +N+ F+ ITG+      
Sbjct: 544 RDISQLKETQQQLQTSEEKFAKAFHASPDGLLLSRQSDGLLIEVNEGFSRITGFNSALSV 603

Query: 555 ALEPWDLTPVRYRASEAEQLERLKQTHRYGPYQKHYRHKDGRLVAVRLNGSLVTAANGEP 614
                DL          + L+ L++      +  H R  DG++    ++   +   N E 
Sbjct: 604 DRSTLDLGIWVNLNERKQMLDLLQRDGFVKDFSCHIRRNDGQIRLCEVSSRPLPIGN-ED 662

Query: 615 LILFVVEDITEQERTVARVNLLAQVFQQSGEGITIIDANDIIVDVNSAFTQITGYS 670
            +L +  DITE+     ++   A VF+ + EG+ I D    I  VN AFT+ITGYS
Sbjct: 663 CMLTIARDITERHLMQEKLQQAATVFESTAEGVLITDTQQHISAVNRAFTEITGYS 718



 Score = 50.1 bits (118), Expect = 6e-10
 Identities = 43/180 (23%), Positives = 87/180 (48%), Gaps = 7/180 (3%)

Query: 496 EIARNQAFQATLVESEEKYRNLFDKAPVGHVLKRLEDSQFVAINQAFTEITGYTLEELQA 555
           +I+  +  +  L  SE+K+ ++F + P   V+ RL D   + +N+AF E  G +  E+  
Sbjct: 421 DISEAKRTEEALRLSEQKFASVFRQCPDILVIARLLDGCLLEVNKAFEEQIGLSAAEVVG 480

Query: 556 LEPWDLTPVRYRASEAEQLERLKQTHRYGPYQKHYRHKDGRLVAVRLNGSLVTAANGEPL 615
               +L     +      L+RL Q       +  +R  +G+ V   L  +     +  P 
Sbjct: 481 HNATELNIWGIQGVGPSLLQRL-QAGSIRNLEMPFRRSNGQ-VFTGLISAEPFDLDTTPA 538

Query: 616 ILFVVEDITEQERTVARVNL----LAQVFQQSGEGITIIDAND-IIVDVNSAFTQITGYS 670
           ++ VV DI++ + T  ++       A+ F  S +G+ +   +D ++++VN  F++ITG++
Sbjct: 539 LVVVVRDISQLKETQQQLQTSEEKFAKAFHASPDGLLLSRQSDGLLIEVNEGFSRITGFN 598



 Score = 38.5 bits (88), Expect = 2e-06
 Identities = 53/190 (27%), Positives = 79/190 (41%), Gaps = 19/190 (10%)

Query: 493 LSKEIARNQAFQATLVESEEKYRNLFDKAPVGHVLKRLEDSQFVAINQAFTEITGYTLEE 552
           LS EIAR    +  L  SE  YR L +         R+ D  +  ++    ++ GY L  
Sbjct: 292 LSSEIARRVELEQELRSSEYHYRGLVESLSAIAWEARVSDFTYSYVSPHAEDLLGYPLSH 351

Query: 553 L-------QALEPWDLTPVRYRASEAEQLERLKQTHRYGPYQKHYRHKDGRLVAVRLNGS 605
                     + P DL     RA      E L        Y+      DGR + VR   S
Sbjct: 352 WLVPGFWRNIIHPADLI----RAQTYCDHEVLAGRDHCIDYR--VITADGRCLWVRDIVS 405

Query: 606 LVTAANGEPLILFVVEDITEQERTVARVNL----LAQVFQQSGEGITIIDAND-IIVDVN 660
           L+   + EPL+  ++ DI+E +RT   + L     A VF+Q  + + I    D  +++VN
Sbjct: 406 LIEHGH-EPLMRGLMIDISEAKRTEEALRLSEQKFASVFRQCPDILVIARLLDGCLLEVN 464

Query: 661 SAFTQITGYS 670
            AF +  G S
Sbjct: 465 KAFEEQIGLS 474



 Score = 28.9 bits (63), Expect = 0.002
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 497 IARNQAFQATLVESEEKYRNLFDKAPVGHVLKRLEDSQFVAINQAFTEITGYTLEE 552
           IAR+   +  + E  ++   +F+    G VL         A+N+AFTEITGY+  E
Sbjct: 667 IARDITERHLMQEKLQQAATVFESTAEG-VLITDTQQHISAVNRAFTEITGYSETE 721