Pairwise Alignments

Query, 673 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 983 a.a., Sensory box/GGDEF family protein from Acidovorax sp. GW101-3H11

 Score = 72.4 bits (176), Expect = 1e-16
 Identities = 93/386 (24%), Positives = 164/386 (42%), Gaps = 42/386 (10%)

Query: 296 VKYVQPLNSSRSVLGLDLNSEPVRAAAIAKVRATLAPVMTSKIQLAEDPNGPGGALLLVP 355
           V+ V P   + S++G D   +P ++A   + R T    +   I+L +   G  G   +  
Sbjct: 110 VRQVVPRQGNESLIGFDQLKDPRQSAESIRARDTGLLTLAGPIELVQGGLGVVGRQPVYL 169

Query: 356 SFDRVG-NIKGFCSAVIDIESII--NKVEQV--KGLHWRLTDMSADGALLYANSQKKFPS 410
             D+   +  GF    I +  ++   ++ Q+  +G H+RL  +  D        ++   +
Sbjct: 170 DDDQGRRSFWGFTYVTIRLPEVLAATRLPQLTERGYHYRLWRVRPD-----TGEEQTITA 224

Query: 411 FSGKLHSDKSGQYYQAHLMLADRHWHIVIYESYAALMGETFSLSLLLLLLAFITCAVVSG 470
            +    SD  G+     L L +  W + +  +         +L   L LL  +  A +S 
Sbjct: 225 STPPPGSDAEGR----SLTLPNGQWTLSLAPANGWGAPAVLALRCALGLLFALLMAYLSR 280

Query: 471 MTLISSGERYRIADKVAEKTMALSKEIARNQAFQATLVESEEKYRNLFDKAPVGHVLKRL 530
           + ++       +A +VA++T  +          QAT    +++ R   D  P    L  L
Sbjct: 281 LLVVLKAHERGLAFQVAQRTSEI----------QAT----QQQLRATIDAIP--DPLFEL 324

Query: 531 E-DSQFVAINQAFTEITGYTLEELQALEPWDLTPVRYRASEAEQLERLKQTHRYGPYQKH 589
           + D ++ +++   TE+     E+L      D+ P     S  + L+   QT  +   ++ 
Sbjct: 325 DVDGRYYSVHSPRTELLVAPAEQLIGRNVTDVLPALAALSVMDVLKEA-QTQGWSTGRQI 383

Query: 590 YRHKDG------RLVAVRLNGSLVTAANGEPLILFVVEDITEQERTVARVNLLAQVFQQS 643
                G       L A R  GS   A    P  + +  DITE++R+  ++ L AQVF QS
Sbjct: 384 VLDLPGLGATWFELSAARKPGSPGAA----PRFILLSRDITERKRSQEQLQLTAQVFDQS 439

Query: 644 GEGITIIDANDIIVDVNSAFTQITGY 669
            E I + DA+  IV +N AFT+ITGY
Sbjct: 440 SEAIVVADASHTIVRINRAFTRITGY 465



 Score = 31.2 bits (69), Expect = 2e-04
 Identities = 44/157 (28%), Positives = 64/157 (40%), Gaps = 15/157 (9%)

Query: 487 AEKTMALSKEIARNQAFQATLVESEEKYRNLFDKAPVGHVLKRLEDSQFVAINQAFTEIT 546
           A + + LS++I   +  Q  L  + +    +FD++    V+     +  V IN+AFT IT
Sbjct: 409 APRFILLSRDITERKRSQEQLQLTAQ----VFDQSSEAIVVADASHT-IVRINRAFTRIT 463

Query: 547 GYTLEELQALEPWDLTPVRYRA---SEAEQLERLKQTHRYGPYQKHYRHKDGRLVAVRLN 603
           GY   E        LT         ++A      K+ H  G  +   R KDG      L+
Sbjct: 464 GYQESEAVGQSVRLLTVAESTQEFDADAVYARLTKEGHWEG--EAWGRRKDGATYPQWLS 521

Query: 604 GSLVTAANG---EPLILFVVEDITEQERTVARVNLLA 637
            S V   NG     + LF   DIT Q     R+  LA
Sbjct: 522 VSSVRDGNGCATHSITLF--RDITVQREAQDRIQRLA 556