Pairwise Alignments

Query, 673 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1247 a.a., bifunctional diguanylate cyclase/phosphodiesterase from Pseudomonas fluorescens SBW25-INTG

 Score = 73.2 bits (178), Expect = 7e-17
 Identities = 50/183 (27%), Positives = 83/183 (45%), Gaps = 1/183 (0%)

Query: 488 EKTMALSKEIARNQAFQATLVESEEKYRNLFDKAPVGHVLKRLEDSQFVAINQAFTEITG 547
           E  + + ++I + +  Q  L  SEEK+   F  +P G +L R  D   + +N  F+ ITG
Sbjct: 537 EAIVVVVRDITQLKETQQQLQTSEEKFAKAFHASPDGLLLSRQRDGLLLEVNDGFSRITG 596

Query: 548 YTLEELQALEPWDLTPVRYRASEAEQLERLKQTHRYGPYQKHYRHKDGRLVAVRLNGSLV 607
           +           DL            LE + +      +  H R  DG++    L+   +
Sbjct: 597 FNSAASLDQSTLDLGIWVDLNERKHMLELMARDGFVRDFICHIRRNDGQIRLCELSSRPL 656

Query: 608 TAANGEPLILFVVEDITEQERTVARVNLLAQVFQQSGEGITIIDANDIIVDVNSAFTQIT 667
              + +  +L +  DITE++    ++   A VF+ + EG+ I D    I  VN AF++IT
Sbjct: 657 PIGDDD-CMLTIARDITERQLMQEKLQQAATVFESTAEGVLITDTRQNISAVNRAFSEIT 715

Query: 668 GYS 670
           GYS
Sbjct: 716 GYS 718



 Score = 48.9 bits (115), Expect = 1e-09
 Identities = 41/185 (22%), Positives = 85/185 (45%), Gaps = 17/185 (9%)

Query: 496 EIARNQAFQATLVESEEKYRNLFDKAPVGHVLKRLEDSQFVAINQAFTEITGYTLEEL-- 553
           +I+  +  +  L  SE+K+ ++F + P   V+ RL D   + +N+AF +  G   E++  
Sbjct: 421 DISEAKRTEEALQLSEQKFASVFQQCPDILVIARLSDGCLLEVNKAFEDQVGLKAEDVIG 480

Query: 554 ---QALEPWDLTPVRYRASEAEQLERLKQTHRYGPYQKHYRHKDGRLVAVRLNGSLVTAA 610
               AL  W +  +         L +  QT      +  +   +G+     ++       
Sbjct: 481 KTATALNIWGIPGI------GPDLLKRVQTTSIRNLEMPFLRNNGQAFTGLISAEPFQLD 534

Query: 611 NGEPLILFVVEDITEQERTVARVNL----LAQVFQQSGEGITIIDAND-IIVDVNSAFTQ 665
             E +++ VV DIT+ + T  ++       A+ F  S +G+ +    D ++++VN  F++
Sbjct: 535 TTEAIVV-VVRDITQLKETQQQLQTSEEKFAKAFHASPDGLLLSRQRDGLLLEVNDGFSR 593

Query: 666 ITGYS 670
           ITG++
Sbjct: 594 ITGFN 598



 Score = 39.7 bits (91), Expect = 9e-07
 Identities = 50/185 (27%), Positives = 79/185 (42%), Gaps = 13/185 (7%)

Query: 493 LSKEIARNQAFQATLVESEEKYRNLFDKAPVGHVLKRLEDSQFVAINQAFTEITGYTLEE 552
           LS EI+R  A +  L  SE  YR L +          + D  +  ++    E+ GY    
Sbjct: 292 LSSEISRRVALEQELRSSEYHYRGLVESLSAIAWEASVTDFTYSYVSPHAEELLGYPRAH 351

Query: 553 LQALEPWD--LTPVRYRASEAEQLERLKQTHRYGPYQKHYR--HKDGRLVAVRLNGSLVT 608
                 W   + P     +EA      ++T     +   YR    DGR + VR   SL+ 
Sbjct: 352 WLIPGFWRNIIHPADLLRAEAYCY---RETRANRDHSIDYRVITADGRCLWVRDIVSLIE 408

Query: 609 AANGEPLILFVVEDITEQERTVARVNL----LAQVFQQSGEGITIIDAND-IIVDVNSAF 663
             + EP++  ++ DI+E +RT   + L     A VFQQ  + + I   +D  +++VN AF
Sbjct: 409 HGH-EPVLRGLMIDISEAKRTEEALQLSEQKFASVFQQCPDILVIARLSDGCLLEVNKAF 467

Query: 664 TQITG 668
               G
Sbjct: 468 EDQVG 472



 Score = 27.3 bits (59), Expect = 0.004
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 497 IARNQAFQATLVESEEKYRNLFDKAPVGHVLKRLEDSQFVAINQAFTEITGYTLEELQAL 556
           IAR+   +  + E  ++   +F+    G ++     +   A+N+AF+EITGY+  E    
Sbjct: 667 IARDITERQLMQEKLQQAATVFESTAEGVLITDTRQN-ISAVNRAFSEITGYSEAEALGQ 725

Query: 557 EP 558
            P
Sbjct: 726 TP 727