Pairwise Alignments

Query, 324 a.a., hypothetical peptide transporter (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 514 a.a., dipeptide/tripeptide permease DtpA from Vibrio cholerae E7946 ATCC 55056

 Score =  149 bits (376), Expect = 1e-40
 Identities = 98/336 (29%), Positives = 162/336 (48%), Gaps = 38/336 (11%)

Query: 14  PKGLFLLFTTELWERFSYYAMRAILVLYLVDQVGKQGGGLGWTQADALSLYGTFTALVYL 73
           P   +L+F+ E WERF +Y M+AIL +Y+V  +G         ++ +  L+G F+ALVY 
Sbjct: 31  PNAFYLIFSIEFWERFGFYGMQAILTVYMVKIMGMD-------ESASFVLFGAFSALVYG 83

Query: 74  TPLIGGWLADNFLGQRKAIYFGGALMATGQFMLAAPHAWFPGIETTVFYIGLGTLILGNG 133
              IGGW+ D  +G ++AI  G  +M  G  +L    A  P +  T+ YI +G + +GNG
Sbjct: 84  FVAIGGWIGDKVIGTKRAITLGAIVMMVGYVLLGLSTADHPLVGPTLIYIAMGFITVGNG 143

Query: 134 LFKPNISTMVGDLYEEGDHRRDGAFTIFYMGINLGAALSGFVVAWAYTSFGHAEVINGKE 193
           LFK N S+++  +Y E D R DGAFT++YM INLG+  S  +        G+        
Sbjct: 144 LFKANPSSLLAKIYPENDPRLDGAFTMYYMAINLGSFFSMIITPLVAIKMGYGMAFGVSA 203

Query: 194 VFINNWQAGF-FC-----------------------AGIGMLLSLVIQFLFAQKLLGDIG 229
           V +      F FC                         +G +++ ++     Q L    G
Sbjct: 204 VGLAITVVNFLFCLRMLKGTGSPADLMPVNKMYLVLVAVGSIIASLVCSYLLQNLTLAHG 263

Query: 230 TVPAARLERERQAKLGNVRKE--PLTKVERDRIKVIMVLGLFTIIFWAGFEQAGGLMNLF 287
            +  A L       LG   KE   ++ +ER ++ V  +L L  ++F+  + Q    +N F
Sbjct: 264 ILVVAGL-----FILGCYFKEAFSMSGIERAKMLVAFILMLQGVVFFVLYFQMPTSLNFF 318

Query: 288 TNEFTDRYIGTWEVPTTYFQSLNAIFIVLFAPVVAS 323
                + +I  ++V    FQ+LN  +I++ +P++A+
Sbjct: 319 AINNVEHHIFGFDVAPEQFQALNPFWIMIASPILAA 354