Pairwise Alignments

Query, 725 a.a., toxin secretion ABC transporter, ATP-binding subunit/permease protein, putative (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 704 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

 Score =  213 bits (541), Expect = 3e-59
 Identities = 158/639 (24%), Positives = 294/639 (46%), Gaps = 16/639 (2%)

Query: 87  GLSSRALKCPLEEVGKLALPCILHWDMNHFVVLTGVTKKSISINDPAAGKRTL----SLQ 142
           GL ++  + PL+++  L  P +L        VL  + +++       A    +    SL 
Sbjct: 49  GLIAKENRAPLDQIPHLVFPVVLLLKGGEACVLNSINQETQEAEIVTAESGLVPVAYSLS 108

Query: 143 EFAKHFTGIALELTPTKAFVKQDERQQMRLSQ-----LWTKISGVNAALITLLLLSVLLQ 197
           +    + G        K   + DER    L        W+ I         +L+ S+L+ 
Sbjct: 109 DLEAMYIG---RYFMVKKQFRFDERSPEVLKPRDGHWFWSTIYKSKHIYRDVLIASLLIN 165

Query: 198 VFALVTPYYMQWVVDEVLVSQDQPLLIVLAIGFGLLVVINVFTTGVRSWLVLRVSSLLNM 257
           +FA+  P + + V D+V+ +     L VL+ G  ++ + +     +RS+ +       ++
Sbjct: 166 LFAVAAPMFSRIVYDKVVPNLAFETLWVLSSGILVIFLFDFVFKMLRSYFIDVAGKKSDI 225

Query: 258 QMGVNLLRHLLRLPMNYFEKRHIGDLVSRFGSLAQVRERLTTGLVETVVDGVMSIAVLVM 317
            +   L   ++ + M       +G           +RE  T+  + +++D   ++  LV+
Sbjct: 226 LISSKLFSKVMGIRMEA-RPPSVGAFARHLQEFESIREFFTSATISSLIDLPFALLFLVL 284

Query: 318 MLIYSVKLTLVVMAAVALYTLMRFALYRPLHRATEESIQAKAKEQSNFLENIRGIQTIKL 377
           + + +  L  V +  V +  +  F +   L RA EE  +  +++ +N +E++ G++T+KL
Sbjct: 285 IWLMAGHLVWVPVIGVLILVIYSFLIQSRLKRAIEEGSRLASQKYANLIESLAGLETVKL 344

Query: 378 FTCESARQGIWQNRYSEVINADIRLGRLKISFDAMNKLLFGVENIIVIYMAAMIVMSGGL 437
           F  +   Q  W+   + + N +I+  R+  S       +    NI +I +   ++ +G L
Sbjct: 345 FGAQGQFQYRWEEAVAHMANWNIKSRRITDSIQNTAGFVQQAANIGMIIVGVYLISNGDL 404

Query: 438 TIGMVLAFIAYKNQMTERVASLIEQLIMFRMLRLHLDRISDI-ALHEQEAHQEGFTPLNV 496
           T+G ++A      +    +  L      +   +  +  I  + ++ +++   + +    +
Sbjct: 405 TMGGLIAATMLSGRAIGPLVQLSLLSTRYNQAKSSMTIIEQVMSMPDEQEEGKRYIHRPI 464

Query: 497 VKGRLSLENVSFRYGENEPEVVSNLSLDIQAGESVAIVGASGCGKTTLVKLMLGLLVPSS 556
           ++G++ L+ V+F Y  +    V +LSL I  GE VAI+G  G GKTTL +L++GL  P+ 
Sbjct: 465 IQGKIELDRVTFHYPNSPIASVRDLSLTIHPGEKVAIIGRIGSGKTTLERLIMGLYKPTE 524

Query: 557 GRILLDGQAIQQIGLTQYRQQIAAVMQDDTLLSGSIADNITFFDPEPNYVKMQQCAQLAV 616
           G + +D   I Q+     R+ I  V QD  L  GSI DNIT   P  +  ++   A  A 
Sbjct: 525 GHVRIDDTDISQLHHIDIRRNIGCVPQDSVLFYGSIRDNITLGRPLSDDREVMDAANRAG 584

Query: 617 IDMDIAHMPMGYNSLVGDMGNQFSGGQVQRLLLARALYQSPSILFMDEATSHLDIMNEAK 676
           + +     P G    VG+ G   SGGQ Q + +ARA    P +L MDE TS +D  +E  
Sbjct: 585 VTVFTQQDPAGLERQVGEGGMLLSGGQRQSVSIARAFLGRPPVLLMDEPTSAMDNRSEMH 644

Query: 677 ISEQIKNL--NMTRIIIAHRPETIKQADRVVVMHQGKIM 713
           I +Q+  L  + T I+I H+   +   DRV+VM +G I+
Sbjct: 645 IKQQLSQLKPSETLILITHKTSMLDVVDRVIVMEKGCII 683