Pairwise Alignments

Query, 725 a.a., toxin secretion ABC transporter, ATP-binding subunit/permease protein, putative (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 721 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

 Score =  282 bits (721), Expect = 5e-80
 Identities = 195/662 (29%), Positives = 332/662 (50%), Gaps = 17/662 (2%)

Query: 69  ANLKGMNLQQLISLGDSIGLSSRALKCPLEEVGKLALPCILHWDMNHFVVLTGVTKKSIS 128
           ANL  M +++     D +GL S+  K  ++    L LP ++ +    + V+        +
Sbjct: 56  ANLTDMEMREA---ADYLGLKSQITKLSIQAFNTLPLPALIEYQ-GGWKVMIQTDDNGWT 111

Query: 129 INDPAAGK-RTLSLQ--EFAKHFTGIALELTPTKAFVKQDERQQMRLSQLWTKISGVNAA 185
             DPA     TLS    E   H+    + +      VK+    +  LS     I    + 
Sbjct: 112 AYDPATDSLHTLSFTSAESTAHYK--VMLIADESLSVKE---VKFGLSWFAPSILRQKSQ 166

Query: 186 LITLLLLSVLLQVFALVTPYYMQWVVDEVLVSQDQPLLIVLAIGFGLLVVINVFTTGVRS 245
           L  + L ++ LQ+FALV+P   + V+D+VLV +    L VLA+    L +     + +R+
Sbjct: 167 LRDVFLYAIALQIFALVSPMLFENVIDKVLVGRSLSSLHVLALAMLALAIAEPAYSYLRN 226

Query: 246 WLVLRVSSLLNMQMGVNLLRHLLRLPMNYFEKRHIGDLVSRFGSLAQVRERLTTGLVETV 305
            +   ++S +N ++   L RHL+ LP+ YF++R  G +++R   +AQ+R+ LT   +  +
Sbjct: 227 TVFGHLASQVNAELSGRLYRHLVGLPLTYFKQRQTGQIIARVREMAQIRQFLTGSTLMLL 286

Query: 306 VDGVMSIAVLVMMLIYSVKLTLVVMAAVALYTLMRFALYRPLHRATEESIQAKAKEQSNF 365
           +D +     L +M  Y+  LT +V+ ++ +Y ++       + +  E   ++ A   +  
Sbjct: 287 LDLIFVTVFLAVMFHYASTLTWLVIGSLVIYFVLWLIAGPLIRKKVESEYESDANATTFL 346

Query: 366 LENIRGIQTIKLFTCESARQGIWQNRYSEVINADIRLGRLKISFDAMNKLLFGVENIIVI 425
            E + GI+TIK    E      WQ   S+ +N      +  +       L+  +   +++
Sbjct: 347 TEAVTGIETIKTTATEHRFLEQWQRILSQQLNRSFDAQKSGLIAGQAIALVQKLTAALLL 406

Query: 426 YMAAMIVMSGGLTIGMVLAFIAYKNQMTERVASLIEQLIMFRMLRLHLDRISDIALHEQE 485
           +     V+ G +T G ++AF      +T+ V  L +    F+   + L R+ DI    +E
Sbjct: 407 WWGVSAVLKGEITPGQLVAFNMLAGHVTQPVLRLAQIWQDFQHTLIALRRVGDILDEPRE 466

Query: 486 AHQEGFTPLNVVKGRLSLENVSFRYGENEPEVVSNLSLDIQAGESVAIVGASGCGKTTLV 545
             ++G   +  + G +   N+ FRY ++ PEV++NLSL I+ G+ + + G SG GK+TL 
Sbjct: 467 NSKQGLASVPELDGGIEFSNIRFRYHQDAPEVLANLSLKIKPGQFIGVTGPSGSGKSTLT 526

Query: 546 KLMLGLLVPSSGRILLDGQAIQQIGLTQYRQQIAAVMQDDTLLSGSIADNITFFDPEPNY 605
           +L+  L VP  G++L+DG  +        R+ ++ V+Q+  L SGS+ADNI    P+ + 
Sbjct: 527 RLLQRLYVPQHGQVLVDGMDLAIADPVSLRRNMSVVLQESILFSGSVADNIRLCKPQASD 586

Query: 606 VKMQQCAQLAVIDMDIAHMPMGYNSLVGDMGNQFSGGQVQRLLLARALYQSPSILFMDEA 665
            +++  AQLA     I  +P G+N  VG+ G   SGGQ QR+ LARAL  +P IL +DEA
Sbjct: 587 EEIRHAAQLAGALAFIEGLPHGFNQPVGEKGAALSGGQRQRIALARALLVNPRILLLDEA 646

Query: 666 TSHLDIMNEAKISEQIKNL--NMTRIIIAHRPETIKQADRVVVMHQGKIM---TAEELQQ 720
           TS LD  +EA I   +  +    T I IAHR  TI+ AD + V+ +G++    T EEL  
Sbjct: 647 TSALDYNSEASIMSNMDEICRGRTVISIAHRLNTIRHADNIFVLDKGQVAESGTHEELLA 706

Query: 721 AQ 722
            Q
Sbjct: 707 QQ 708