Pairwise Alignments

Query, 376 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 403 a.a., Integrase from Pseudomonas stutzeri RCH2

 Score = 62.8 bits (151), Expect = 2e-14
 Identities = 78/351 (22%), Positives = 144/351 (41%), Gaps = 56/351 (15%)

Query: 32  FMRAYPSGIRCYYVRFQYQGLRQLHVIGNANDITLDDARLEARKHIDALRYGV----VSE 87
           F+   P+G + +  +++ QG   L  IG+   ++L +AR    K    ++ G+      +
Sbjct: 30  FLLVKPAGGKLWRWKYRLQGKENLFAIGSFPQVSLAEARTAREKARALVKQGIHPAHERQ 89

Query: 88  PVPSLTLCAFAEEFFPRYARHWKPSTLLNSQRGFTRHIAPVLGDVPLA---ALTRQHIEQ 144
            V    L A AE       +  + S+     + +   I PV          +  R+++  
Sbjct: 90  QVKQRNLEALAER------KRAQESSFAKVAQAYLAEIKPVFAHSSYRTKESRIRKYLSP 143

Query: 145 WFDGMHASKGMANRLLPLLS------------VMMQQAEVYEYRPA----QSNPC---KG 185
            FDGM  S     ++ PLL             V    + ++E+       ++NP    +G
Sbjct: 144 KFDGMPMSDIGVKQIRPLLEECKAHGAWAAIHVKGDLSAIFEFAVVRGLVEANPIPSLRG 203

Query: 186 FKRYKSTHSERYLSEEELKRLWLALDSHEKASPVAVMVLRLLILTGCRCNEVCSVKWA-- 243
             R  ++ S+  ++ E++++ + AL  + +  P   + LRL+ LT CR  E    +W   
Sbjct: 204 LLRVPASESKAAMTREQIQKFYQALRGY-RGYPETALCLRLIALTACRPGEAADAEWEEF 262

Query: 244 DYRQGHWYLPDSKTGAKTVF---LSSFARELLSDWPQVS---EHLFWHQSPSQPFTPACL 297
           D+    W  P +K  A+      LS+ A  +L D  +++    +LF H+S          
Sbjct: 263 DFEDAVWRRPAAKMKARREHVSPLSAQAIAVLKDLQRITGGGRYLFPHRSGK-------- 314

Query: 298 DRFWRPFRETIHLNDVRI------HDLRHTYASIAVKHNINILTIGRLLGH 342
             F  P R T  + D+ +      H  R T+++ A ++      I R L H
Sbjct: 315 -GFTTPNRLTYAMRDMNLGRGTTPHCWRTTFSTWANENGFRPDAIERQLAH 364