Pairwise Alignments

Query, 376 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 382 a.a., phage-related integrase from Xanthomonas campestris pv. campestris strain 8004

 Score = 52.8 bits (125), Expect = 2e-11
 Identities = 70/322 (21%), Positives = 133/322 (41%), Gaps = 44/322 (13%)

Query: 67  DDARLEARKHIDALRYGVVSEPVPSLTLCAFAEEFFPRYARHWKPSTLLNSQRGFTR--H 124
           ++A+ EAR     +  GV ++ +  LT+     ++        +    +++++ F R  +
Sbjct: 70  ENAKREARIWRKTIDAGVQADRL--LTVADVCRDYTAAIEAEGRTRAAIDARKRFDRIVY 127

Query: 125 IAPVLGDVPLAALTRQHIEQWFDGMHA-----------SKGMANRLLPLLSVMMQQA--- 170
           + P+ G +    LT++H+E W   M A           S+   NR L  L   + ++   
Sbjct: 128 VDPI-GKLRADKLTQRHLEAWMTRMEAGEMTGRKKALPSRATFNRNLTALKAALNRSVAR 186

Query: 171 -EVYEYRPAQSNPCKGFKRYKSTHSERYLSEEELKRLWLALDSHEKASPVAVMVLRLLIL 229
            E+ + R  +    K  K   S   + YL + + + L  A+ +  +A      +   + L
Sbjct: 187 REIPQERVIEWQSIKPHKG-ASGRRDTYLDKAQRRALLDAMGTDLRA------LAECVAL 239

Query: 230 TGCRCNEVCSVKWADYRQGHWYLP-DSKTGAKTVFLSSFARELLSD---------WPQVS 279
           TGCR  +  +++  D+   +      +KTGA+TV +S  AR L            W   +
Sbjct: 240 TGCRPGDPVAMRRKDWDSKNGLATFATKTGARTVPVSPAARALFDRLATDKQGDAWMFTN 299

Query: 280 EHLFWHQSPSQPFTPACLDRFWRPFRETIHLNDVRIHDLRHTYASIAVKHNINILTIGRL 339
           E   W      P   A       P         V ++ LRH + + A+   ++ +T+ RL
Sbjct: 300 EGEHWTPQAWAPKVKAAAAAAGLP-------TGVVLYVLRHAWITDAIIGGLDAVTVARL 352

Query: 340 LGHALPETTLKYTHLAKRDVQQ 361
            G +L   +  Y HLA+   ++
Sbjct: 353 TGTSLEMISQHYGHLAQHAARE 374