Pairwise Alignments

Query, 376 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 344 a.a., Phage integrase:Phage integrase, N-terminal SAM-like protein from Pseudomonas syringae pv. syringae B728a

 Score = 47.0 bits (110), Expect = 8e-10
 Identities = 58/230 (25%), Positives = 93/230 (40%), Gaps = 18/230 (7%)

Query: 34  RAYPSGIRCYYVRFQYQGLRQLHVIGNANDITLDDARLEARKHIDALRYGVVSEPVPSLT 93
           R   SG+  YY        +++ +  +     ++ A+LE  +   AL   V       LT
Sbjct: 17  RKQRSGVVYYYYDIGGSPRKEIPLGSDYGMAIVEYAKLEKSRTSSALVQQV-------LT 69

Query: 94  LCAFAEEFFPRYARHWKPSTLLNSQRGFTRHIAPVLGD--VPLAALTRQHIEQWFDGMHA 151
               AE++         P+T  ++ R   + +     D   PL A+  QH+ Q+      
Sbjct: 70  FAYVAEKYMIEVVPTKSPATQKDNAREL-KQLLKFFDDPPAPLEAIEPQHVVQYLRQRGK 128

Query: 152 SKGM-ANRLLPLLSVMMQQAEVYEYRPAQSNPCKGFKRYKSTHSERYLSEEELKRLWLAL 210
           +  + ANR   LLS +   A    Y  A +NPC G K +K    + Y+ +E    ++  +
Sbjct: 129 TAPVRANREKALLSAIWNFAMSAGYT-ALANPCAGVKGHKEVGRDHYIEDE----MFALV 183

Query: 211 DSHEKASPVAVMVLRLLILTGCRCNEVCSVKWADYRQGHWYLPDSKTGAK 260
            SH  A       L L  LTG R  +   +   D R G  ++   KT AK
Sbjct: 184 YSH--AEQPLRDALDLFYLTGQRIADTLKMDERDIRDGRLWVQQGKTNAK 231