Pairwise Alignments

Query, 376 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 310 a.a., integrase from Sinorhizobium meliloti 1021

 Score = 58.9 bits (141), Expect = 2e-13
 Identities = 60/225 (26%), Positives = 105/225 (46%), Gaps = 24/225 (10%)

Query: 152 SKGMANRLLPLLSVMMQQAEVYEYRPAQSNPCKGFKRYKSTHSE-RYLSEEELKRLWLAL 210
           S    NR +  L  ++++A    Y+    +    FKR K      R+L  +E + L+  +
Sbjct: 99  SNATINRKMAALGKLLRKA----YKMGDIHNLPEFKRQKEKAGRLRFLEADEEEVLFREI 154

Query: 211 DSHEKASPVAVMVLRLLILTGCRCNEVCSVKWADYRQGHWYLPDSKTG-AKTVFLSSFAR 269
            S    S + + +   L+ TG R  E  ++KW D  +G      +K+G ++TV L+  A+
Sbjct: 155 ASR---SELYLYLSIFLVDTGARLGEAIALKWNDIHEGRATFWVTKSGRSRTVPLTVRAK 211

Query: 270 ELLSDWPQVSEHLFWHQSPSQPFTPACLDRF---WRPFRETIHL---NDVRIHDLRHTYA 323
           + L    +V++     +SP  PF+     ++   W   +    L   +D+  H LRHT A
Sbjct: 212 DALK---RVAD-----RSPG-PFSRIDQQKYRAVWNAAKVDAGLGNEDDLVPHILRHTCA 262

Query: 324 SIAVKHNINILTIGRLLGHALPETTLKYTHLAKRDVQQAANVVSQ 368
           S  V+  I++  +   LGH   E T++Y HLA  D+     V+ +
Sbjct: 263 SRLVRGGIDLRRVQMWLGHQTLEMTMRYAHLASHDLDMCVPVLER 307