Pairwise Alignments

Query, 376 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 324 a.a., phage integrase family protein (RefSeq) from Shewanella loihica PV-4

 Score = 56.2 bits (134), Expect = 1e-12
 Identities = 60/264 (22%), Positives = 111/264 (42%), Gaps = 23/264 (8%)

Query: 100 EFFPRYARHWKP---STLLNSQRGFTRHIAPVLGDVPLAALTRQHIEQWFDGMHASKG-- 154
           +   RY R   P        S    ++ +   LGD+ +  LT +HI Q+ D +   KG  
Sbjct: 60  DLLDRYLREVAPLKAEASYKSNLAQSKFLRAGLGDIRVDELTPRHIYQYMD-VRGKKGKT 118

Query: 155 MANRLLPLLSVMMQQAEVYEYRPAQSNPCKGFKRYKSTHSERYLSEEELKRLWLALDSHE 214
             NR + +LS M++ A    +     NPC+   R+K T  +RY+ ++E K         +
Sbjct: 119 QTNREIAMLSHMLKYA--IRWGLIDHNPCRSVMRFKETPRDRYIEDKEYKAF------RD 170

Query: 215 KASPVAVMVLRLLILTGCRCNEVCSVKWADYRQGHWYLPDSKTGAKTVFLSS----FARE 270
            A P+    +   +LTG R +++  ++    ++   ++  +KT  K +   S     A +
Sbjct: 171 FAGPLIAAYMDFKLLTGLRKSDILKLRRDALKEDGIHVLINKTKRKIIISWSDHLRAAVQ 230

Query: 271 LLSDWPQ-VSEHLFWHQSPSQPFTPACLDRFWRPFRETIHLNDVRIHDLRHTYASIAVK- 328
            + D P+ ++    +     QP+T       W+  R+ +   +  I   R T   +  K 
Sbjct: 231 AIKDLPRPINSIYLFSTRKGQPYTTDGFSSIWQ--RKMVKAMEKGILTERFTDHDVRAKT 288

Query: 329 -HNINILTIGRLLGHALPETTLKY 351
             +  +    RLL H   + T K+
Sbjct: 289 GSDAELEHATRLLAHLDAKVTQKH 312