Pairwise Alignments

Query, 376 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 449 a.a., phage integrase family protein from Marinobacter adhaerens HP15

 Score = 49.7 bits (117), Expect = 2e-10
 Identities = 79/327 (24%), Positives = 124/327 (37%), Gaps = 54/327 (16%)

Query: 31  FFMRAYPSGIRCYYVRF-QYQGLRQLHVIGNAND-----ITLDDARLEARKHI------- 77
           F  R   SG R +Y R+   QG R    +GN +      +TL +AR +A +         
Sbjct: 30  FMARILKSGDRLFYFRYTNSQGERVFLPVGNYDQSGKDGLTLREARTKAGELSRLYQAGI 89

Query: 78  -DALRYGVVSEPVPSLT-------LCAFAEEFFPRYAR------------HWKPSTLLNS 117
            D   Y    E     T       L A  E      AR            HW    L N 
Sbjct: 90  RDLREYQEAEEDARKATHEAEMARLRAEREAAEAEKARQAARKTVTELFEHWADIDLKNR 149

Query: 118 QRG-------FTRHIAPVLGDVPLAALTRQHIEQWFDGMHASKG---MANRLLPLLSVMM 167
           + G       F + + P +G + +  + + H+ +  D    ++G   MA   L L+  M 
Sbjct: 150 KDGGAEVRRLFEKDVLPKIGQLAVEDVKKGHVTEVVDAQ-LNRGVTRMAKLTLSLIRQMF 208

Query: 168 QQA---EVYEYRPAQSNPCKGFKRYKSTHSERYLSEEELKRLWLALDSHEKASPVAVMVL 224
           + A   ++ EY P  S   K     K    +R L++ E+K L   +   +   P   + +
Sbjct: 209 RFAVDRDLIEYDPTASIR-KSKIGGKDVERDRVLNDGEIKALANQIPDAQML-PSTSIAI 266

Query: 225 RLLILTGCRCNEVCSVKWAD--YRQGHWYLP--DSKTG-AKTVFLSSFARELLSDWPQVS 279
            +++ T CR  E+   +W D   +QG W +P  +SK G    + LSSFA     D  ++S
Sbjct: 267 WIMLTTCCRIGELIKAEWVDVNLKQGAWKIPAENSKNGKPHEIALSSFAVAWFKDLEKLS 326

Query: 280 EHLFWHQSPSQPFTPACLDRFWRPFRE 306
               W    S      C     +  R+
Sbjct: 327 GDSRWCYPNSSDTGSVCPKSITKQIRD 353