Pairwise Alignments

Query, 376 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 334 a.a., site-specific integrase from Ralstonia sp. UNC404CL21Col

 Score = 50.1 bits (118), Expect = 9e-11
 Identities = 61/239 (25%), Positives = 98/239 (41%), Gaps = 18/239 (7%)

Query: 132 VPLAALTRQHIEQWFDGM--HASKGMANRLLPLLSVMMQQAEVYEYRPAQSNPCKGFKRY 189
           + LA L   HI  W +      S    +R + LLS  ++ A   E+    ++P  G +R 
Sbjct: 98  IRLAELRSSHITAWRNVRLRDISGASVSREMTLLSNALRYARE-EWHWLVTDPMTGVRRP 156

Query: 190 KSTHS-ERYLSEEELKRLWLALDSHE-----KASPVAVMVLRLLILTGCRCNEVCSV--K 241
                 ER +S  E+  L +A+   E     ++S    +   + I T  R  E+  +  +
Sbjct: 157 PDNPPRERLISSAEIDALLIAMGYAEEQPVIRSSQRVAVAFLVAIETAMRSGELLGLTSR 216

Query: 242 WADYRQGHWYLPDSKTG-AKTVFLSSFARELLSDWPQVSEHLFWHQSPSQPFTPACLDRF 300
             D+ +   YLP +K G ++ V LS  A ELL   P V         P      A  D  
Sbjct: 217 TVDFERRVAYLPMTKNGNSREVPLSRRAVELLQKLPAVEPG-----EPMFALAAASRDAL 271

Query: 301 WRPFRETIHLNDVRIHDLRHTYASIAVKHNINILTIGRLLGHALPETTLKYTHLAKRDV 359
           +R  +E   + D+  HD RH  A   +   +  L + R+ GH      L Y + +  D+
Sbjct: 272 FRKAKEKAGIADLTFHDSRHE-AITRLAAKLQPLDLARMTGHTNLNELLTYYNASAADI 329