Pairwise Alignments

Query, 376 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 328 a.a., Site-specific recombinase XerD from Paraburkholderia bryophila 376MFSha3.1

 Score = 60.5 bits (145), Expect = 7e-14
 Identities = 58/217 (26%), Positives = 97/217 (44%), Gaps = 14/217 (6%)

Query: 151 ASKGMANRLLPLLSVMMQQAEVYEYRPAQSNPCKGFKRYKSTHSE-RYLSEEELKRLWLA 209
           AS G   R L  +S ++  A+  E+  + +NP K  K+ +      R L   EL RL   
Sbjct: 117 ASNGCVCRELATISAVITHAQ-REWGLSINNPAKLVKKPRLPPGRNRLLKPAELDRLLHE 175

Query: 210 LDS--HEKASPVAVMVLRLLILTGCRCNEVCSVKW--ADYRQGHWYLPDSKTGA-KTVFL 264
           L++  HE  S   V +  L + T  R  E+ S++W   D+ +   YLP +K G  + V L
Sbjct: 176 LNAERHELRSKWLVPLANLALETAMRQGELLSLEWKHVDFEERTAYLPMTKNGKDRYVPL 235

Query: 265 SSFARELLSDWPQVSEHLFWHQSPSQPFTPACLDRFWRPFRETIHLNDVRIHDLRHTYAS 324
           SS A  +L    +V E +        P +   +   W    +   + D   HDLRH   +
Sbjct: 236 SSAAIAILESLERVDERVI-------PISQNVVLCAWPRACKRAGIEDFHFHDLRHMATT 288

Query: 325 IAVKHNINILTIGRLLGHALPETTLKYTHLAKRDVQQ 361
              K   N++ +  + GH+  +   +Y H++  ++ Q
Sbjct: 289 KLAKKLPNVIELASITGHSNVQMLKRYYHVSASELAQ 325