Pairwise Alignments

Query, 376 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 368 a.a., DNA recombinase from Burkholderia phytofirmans PsJN

 Score = 53.9 bits (128), Expect = 7e-12
 Identities = 68/256 (26%), Positives = 106/256 (41%), Gaps = 30/256 (11%)

Query: 129 LGDVPLAALTRQHIEQWFD----------GMHASKGMANRLLPLLSVMMQQAEVYEYRPA 178
           LG VP++  T   I  + D              S       L LLS +   A + E+  A
Sbjct: 34  LGKVPISQATTVDIANYRDIRLATISRTTNRPVSPNTVRLELALLSDLFNIARI-EWGVA 92

Query: 179 QSNPCKGFKRYKSTHS-ERYLSEEELKRLWLALDSHEKASPVAVMVLRLLILTGCRCNEV 237
             NP    ++ K     ER L+  E +R+      H      +V+VL   I T  R  E+
Sbjct: 93  VDNPVMRVRKPKIPPGRERRLTWGEERRILRGASQHRNEQFYSVVVLA--IETAMRQGEI 150

Query: 238 CSVKWA--DYRQGHWYLPDSKTGAKT-VFLSSFARELLSDWPQVSEHLFWHQSPSQPFTP 294
             + W   D R    +LP +K G K  V LS  A + L+     +E       P   +T 
Sbjct: 151 LGLTWENIDLRVRIAHLPATKNGTKRDVPLSLRAVDALTRLGVKTE------GPVFNYTS 204

Query: 295 ACLDRFWRPFRETIHLNDVRIHDLRHTYAS-IAVKHNINILTIGRLLGHALPETTLKYTH 353
           A     WR   + I + D+  HDLRH   S +     ++++ +  + GH   +   +YTH
Sbjct: 205 AGFKSAWRTLLQRIGMMDLHFHDLRHEAISRLFELGTLDMMEVATISGHKSMQMLKRYTH 264

Query: 354 LAKRDVQQAANVVSQL 369
           L      +A+N+V++L
Sbjct: 265 L------KASNLVAKL 274