Pairwise Alignments

Query, 386 a.a., ISSod1, transposase OrfA (NCBI) from Shewanella oneidensis MR-1

Subject, 284 a.a., Mobile element protein from Xanthomonas campestris pv. campestris strain 8004

 Score =  188 bits (478), Expect = 1e-52
 Identities = 105/276 (38%), Positives = 159/276 (57%), Gaps = 3/276 (1%)

Query: 104 LQSHL--FPITLLCRVMSVSKSGYYDWHKRPANVISVETLKLYRLVRQLFKQSRGSLGNR 161
           +Q+H   F +  +CRV+ V++SGYY W   P +  + E  +L  L++  +  S    G+R
Sbjct: 1   MQAHCGEFRVCAMCRVLRVNRSGYYAWLCSPNSERAKEDDRLLGLIKHHWLASGSVYGHR 60

Query: 162 EMVKKLRKEGYQVGRYLVRKIMHRLRLKATQRCAYKVTTQRKHSDAVADNLLNMNFNPVS 221
           ++   LR  G +  R+ V ++M    L+A      K           A NLL+  F+   
Sbjct: 61  KITTDLRDLGERCSRHRVHRLMRTEGLRAQVGYGRKPRFHGGMQCKAAANLLDRQFDVTE 120

Query: 222 ANQVWAGDVTYLKTGEGWMYLAVVMDLYSRRIVGWRIDKRMTTDLISKALIKAYNLRQPA 281
            +  WA D T+++T EGWMYLAVV+DL+SR++VGW +  R  T+L+ +A++ A   R+P 
Sbjct: 121 PDTAWASDFTFIRTHEGWMYLAVVIDLFSRQVVGWAMRDRADTELVVQAVLSAVWRRKPN 180

Query: 282 RGLVFHSDRGSQYTSKQFGRLLSSYGIRASMGDVGACWDNAVVERFFGSLKHDWIFKVAQ 341
            G + HSD+GS YTS  +   L+S+G+  SM   G C DNA VE FFG LK + I ++  
Sbjct: 181 AGCLVHSDQGSVYTSDDWRSFLASHGLVCSMSRRGNCHDNAPVESFFGLLKRERIRRLTY 240

Query: 342 PTREFMKQDVTAYIK-YYNLERLHSANNDLSPVEFE 376
           PT++  + +V  YI+ +YN  R H +  DLSPVEFE
Sbjct: 241 PTKDAARAEVFDYIEMFYNPNRRHGSTGDLSPVEFE 276