Pairwise Alignments

Query, 386 a.a., ISSod1, transposase OrfA (NCBI) from Shewanella oneidensis MR-1

Subject, 285 a.a., Integrase catalytic region (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  211 bits (538), Expect = 2e-59
 Identities = 110/281 (39%), Positives = 165/281 (58%), Gaps = 1/281 (0%)

Query: 97  VRFRFIKLQSHLFPITLLCRVMSVSKSGYYDWHKRPANVISVETLKLYRLVRQLFKQSRG 156
           +RFRF++     FPI  LC+V++VS  G   +  RPA+      + +   +++  + S G
Sbjct: 1   MRFRFVEEHRGAFPIDRLCQVLNVSTRGLRAFRSRPASRRQRMDMVVLAHIKEQSRLSLG 60

Query: 157 SLGNREMVKKLRKEGYQVGRYLVRKIMHRLRLKATQRCAYKVTTQRKHSDAVADNLLNMN 216
           S G   M ++L++ G  VG   V ++M    +   +   +K TT   H+  +A NLLN +
Sbjct: 61  SYGRPRMTEELKEVGVDVGHRRVGRLMRANGITVERTRKFKATTDSDHTFNIAPNLLNRD 120

Query: 217 FNPVSANQVWAGDVTYLKTGEGWMYLAVVMDLYSRRIVGWRIDKRMTTDLISKALIKAYN 276
           F+    NQ WAGD++Y+ T EGW+YL+V++DL+SRR++GW +  RM  DL  +AL  A  
Sbjct: 121 FSAAGPNQKWAGDISYIWTREGWLYLSVILDLHSRRVIGWAVSNRMKRDLAIRALKMAIA 180

Query: 277 LRQPARGLVFHSDRGSQYTSKQFGRLLSSYGIRASMGDVGACWDNAVVERFFGSLKHDWI 336
            R P +G +FHSDRGSQY S  + ++L  +G RASM   G C+DNA VE FF ++K + I
Sbjct: 181 FRSPPKGCIFHSDRGSQYCSHDYQKILRQHGFRASMSGKGNCYDNAAVETFFKTIKAELI 240

Query: 337 FKVAQPTREFMKQDVTAYIK-YYNLERLHSANNDLSPVEFE 376
           ++ +  TR   +  +  YI  +YN  R HSA    SPV FE
Sbjct: 241 WRRSWATRRQAEMAIFEYINGFYNPRRRHSALGWKSPVAFE 281