Pairwise Alignments

Query, 690 a.a., TonB-dependent receptor, putative (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 715 a.a., ligand-gated channel protein from Herbaspirillum seropedicae SmR1

 Score =  183 bits (465), Expect = 2e-50
 Identities = 186/701 (26%), Positives = 301/701 (42%), Gaps = 90/701 (12%)

Query: 8   EAPNDANIERINVT-GRTFNDYKVGSASGAMRGDIDLMDTPQSVNVIPDFVTDEQLATNL 66
           E    A +  I+V+ GR  N Y   S SGA R D  L++ PQSV V+     D+  A  L
Sbjct: 42  EGGTAAALPEISVSAGREKNSYNAPSTSGATRTDTPLLELPQSVRVMTTQQIDDLGAVRL 101

Query: 67  AEVLVNDSSVT-----AGTTRWNRQVFSIRGFELDSGNGYLINGHQQWSHYV--QPIETL 119
           A+ +   S ++      GT  W+   F+IRGF   +  G+L+NG      Y   +   T+
Sbjct: 102 ADTVDYVSGISRLNDFGGT--WDN--FAIRGFS-STDMGFLVNGFPGSRGYNPRRDTATI 156

Query: 120 QQVEVLKGPSSMLYGQSGPGGLVNMVTKKPTYDSMLDLGFDTDGYGSTRAQLDAGGSLNE 179
           +++E LKGP+S LYG S PGG +N+VTKKP + +           G  RA +D+ G L  
Sbjct: 157 ERIEFLKGPASALYGSSEPGGTINIVTKKPQFSASNSAEVSAGTGGLRRATVDSTGPL-- 214

Query: 180 AQSIRYRGVLVKQDTKYWREYSTTDENQERDRWLGYLNLEFDISDDLLLSVKYDHTQDKA 239
           +Q++ YR + + +      E  +        R L   +L + I  + LL+ + +  Q   
Sbjct: 215 SQNLAYRLIAMTE------EGDSRSSLLSNRRSLVAPSLAWVIDKNTLLNYEGEFLQAST 268

Query: 240 GIDAG--------GWLDKQGNVIGERKTVWDAPWAFTDNTVSNLGADLTWQMTNDWKVKV 291
            +D G        G L +   V+ E     D   A   NT       L   ++  W++++
Sbjct: 269 PLDRGIINVRGVLGGLPRD-RVLSEPS---DGNMAMRSNTHQ---LTLEHSLSEQWRMRL 321

Query: 292 G--YNDQQFNRQRLDSAPSLIEGSEDPFKDGYNIKPFDRYDDWQH-----KTAYVDFTGE 344
           G  Y +  F+    ++         +P +   +++  DR   W+       +   +  G+
Sbjct: 322 GASYKESSFDGYYTEAK------LRNPLQ--ADLRTLDRTGTWRQLPSRDMSIQGELHGQ 373

Query: 345 FSLAGMEHQFLIGANYLDYFYQQQIQKGKSQRVI----PGQPIIQQDLDYHQGQLSNPSE 400
           F    + H FL+GA     +   +I +  +   I    P     +  LD      S+   
Sbjct: 374 FKTGDIAHTFLVGAEASKLWMNTEILRSTTLLPIDIYNPIYGAARPALDDRTS--SSDEN 431

Query: 401 YKYYGFYLQDLMTLNEQWKLLAGVRYDEQKKD---------TAGGNSYAVSPKFGVIYSP 451
            +    ++QD ++L+ QWKLL G+R+D+  +          T      AVSP+ G+ Y P
Sbjct: 432 QRVKALFVQDQLSLSPQWKLLGGLRWDQYNQSVVSRVAPVGTTSQRQSAVSPRAGISYLP 491

Query: 452 MDNGSIYVNYSKSFTPQGSVTSSEDVNQGANLKPEYGTQYELGTKWELFNDSLLLTAALF 511
               S+Y++  KSF     V    DVN G    P+  T YE G K +  ++ L    A++
Sbjct: 492 NAWSSVYLSAGKSFRGNSGV----DVN-GRPFDPQRSTSYEAGLKLQSTDERLGANFAVY 546

Query: 512 DITVSNVTTVLDIPVTSDGDKTITTQGGEQHHRGFEVGAQGQLGDSWFVTSSMMYLDAEY 571
           DIT +NV T  D P             GE    GFE  A GQL  +W ++++  + DA  
Sbjct: 547 DITKTNVLTTSDNP-------NFMAAAGEVKSTGFEADAYGQLNANWRLSANFSWDDARV 599

Query: 572 NTGAGKIGGKNLDGKTPIDAPKWSANIWTRYEVT----DNFAMNFGAIYVGERFANDVNT 627
           +       G  L      + P +SA +    E        + +  G  YVG R  N  +T
Sbjct: 600 SKDRTLPTGTRL-----ANIPAYSAGLLVMREDALANGARYGVGGGVNYVGNRSGNAADT 654

Query: 628 ITKDGYVRFDVGAAYTTDIMGKDVSIRANVRNLFDTEYLDG 668
            +   Y    + + +    + K+V +  +V NLF+  Y  G
Sbjct: 655 YSLPAYTLVKLLSYWQ---VSKNVRLSLDVHNLFNRNYYPG 692