Pairwise Alignments

Query, 690 a.a., TonB-dependent receptor, putative (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 731 a.a., TonB-dependent siderophore receptor (RefSeq) from Shewanella sp. ANA-3

 Score =  182 bits (463), Expect = 4e-50
 Identities = 187/722 (25%), Positives = 306/722 (42%), Gaps = 99/722 (13%)

Query: 2   AMPVMAEAPN----DANIERINVTGRT--FNDYKVGSASGAMRGDIDLMDTPQSVNVIPD 55
           A P MA  P     D  +E I V G    +N  KV S         DL++T ++V VI  
Sbjct: 29  AAPAMATEPQSQVVDKKVEHIEVNGEYLGYNTRKVQSGKFTE----DLLNTAKTVTVINQ 84

Query: 56  FVTDEQLATNLAEVLVNDSSVTAGTTRWNRQVFS---IRGFELDSGNGYLINGHQQWSHY 112
            +  +  A +  + L     +T GT            IRG++  S     ING +     
Sbjct: 85  DLIKDMGAQSFTDALRATPGITLGTGEGGNPYGDRPFIRGYDAQSST--FINGMRNVGSQ 142

Query: 113 VQPIETLQQVEVLKGPSSMLYGQSGPGGLVNMVTKKPTYDSML--DLGFDTDGYGSTRAQ 170
            +    ++Q+EVLKGPSS+  G+   GG +N+VTKK   +  +  D+   TD     RA 
Sbjct: 143 SRETFNIEQIEVLKGPSSVYNGRGAVGGSINIVTKKAQSEDFINADVAVGTDSL--KRAS 200

Query: 171 LDAGGSLNEAQSIRYRGVLVKQDTKYWREYSTTDENQERDRWLGYLNLEFDISDDLLLSV 230
           +D    + +  ++R   +    DT    E +        +RW    ++ F ++    +++
Sbjct: 201 VDVNHVIADEAAVRINMMAHDADTPGRDEVT-------GNRWGVAPSVTFGLTTPTKVTL 253

Query: 231 KYDHTQDKAGIDAGGWLDKQGNVIGERKTVWDAPWAFTDNTVSNLGADLTWQMTNDWKVK 290
           +Y H ++    D G   D+     G+   V        DN    L  D    M +   V 
Sbjct: 254 EYYHFENHDIPDYGIPYDQ---ATGQPADV------DPDNFYGLLSRDFRDTMDDTASVL 304

Query: 291 VGY---NDQQFNRQRLDSAPS---LIEGSEDP---FKDGY---NIKPFDRYDDWQHKTAY 338
           + +   ND QF    + S  S   ++   +D      +GY   N K   R+   +     
Sbjct: 305 ISHDFNNDMQFTSTSIYSRNSNYYIVTNPDDTTGNVANGYVWRNTK--SRHSVTKTLATQ 362

Query: 339 VDFTGEFSLAGMEHQFLIG---ANYLDYFYQQQIQKGKSQRVIPGQPIIQQDLDYHQGQL 395
           +  +GE  LAGM ++F +G   +N         +  G  +     Q ++    +Y+   L
Sbjct: 363 LQLSGEAKLAGMTNRFAVGTELSNERTSNLSYTVDTGNGRNAGCNQAMLD---NYNCTLL 419

Query: 396 SNPSEYKYY------------------GFYLQDLMTLNEQWKLLAGVRYDEQKKDTAGGN 437
            NP+ +  +                    Y  + + L E W + AG+R+D+         
Sbjct: 420 DNPNPHDPWVGTITLGTDATVTETDTRSLYAFNTIELTEAWMVNAGIRWDDYSTSAENST 479

Query: 438 SYAVSP------KFGVIYSPMDNGSIYVNYSKSFTPQGSVTSSED-----VNQGANLKPE 486
           S   +       +  V+Y P +NGSIY  +  S  P G  TS+ D      +  A+L+PE
Sbjct: 480 SEFSNDTDFFNYQLSVLYKPAENGSIYAAWGTSSNPPG--TSNGDGADRLGSTNADLEPE 537

Query: 487 YGTQYELGTKWELFNDSLLLTAALFDITVSNVTTVLDIPVTSDGDKTITTQG-GEQHHRG 545
               YELGTKW+ F   L L  ++F I  +N        V + GD+    +  GEQ  +G
Sbjct: 538 DTESYELGTKWDFFAGRLSLNGSVFQIEKNNAR------VATSGDRNSPQENVGEQKVKG 591

Query: 546 FEVGAQGQLGDSWFVTSSMMYLDAEYNTGAGKIGGKNLDGKTPIDAPKWSANIWTRYEVT 605
           FE+G  G   + W       YLDA   +       +  +G    +  K S +++T Y+VT
Sbjct: 592 FELGFSGDFTEHWHGFGGYTYLDATLESNG---YNQAQNGNRFPNTAKNSLSLFTTYDVT 648

Query: 606 DNFAMNFGAIYVGERFANDVNTITKDGYVRFDVGAAYTTDIMGKDVSIRANVRNLFDTEY 665
           ++F +  GA Y+G+ + N  NT++   Y RFD+ ++Y    M + +++R NV+NL D  Y
Sbjct: 649 EDFTVGTGAYYMGKVYGNTANTLSIPSYWRFDLTSSYK---MSEFLTLRLNVQNLTDERY 705

Query: 666 LD 667
            D
Sbjct: 706 YD 707