Pairwise Alignments

Query, 764 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1092 a.a., Sensory box/GGDEF family protein from Pseudomonas fluorescens FW300-N2E2

 Score =  155 bits (393), Expect = 8e-42
 Identities = 145/583 (24%), Positives = 264/583 (45%), Gaps = 17/583 (2%)

Query: 182  TSLQQVHERLGRAVKQLNDSEQRWLFAVEGSRNGIWDWDLRTGEVF-LSDRWKEMIGYLP 240
            T+L+ + ++  R+   L  SE+++  A   S + I   +L +G    ++D +  + GY  
Sbjct: 517  TTLRDITQQQ-RSEAALKASEEKFAKAFHSSPDAITITELESGRYLEVNDGFCRLTGYRA 575

Query: 241  DELEGAFQTWEARLHPDDKQAVLNCLDEYVSGKTKEFESVHRLLHRDGHYVWVFDRGMLV 300
            DE+ G    +E  +  ++KQ      +  + G+    E + R  ++ G  + V    + V
Sbjct: 576  DEVIG-HTVYEVGIWAEEKQRAALLAELRLKGRVVHQEMLGR--NKRGEILTV---EVSV 629

Query: 301  DWDHLGRPTRMIGIHVDVSESEKNHAAIAELVKQSASGHRMLPEAFMEQLSQYLSQRNRA 360
            +   L     ++    DVS      A I  L       +       M++LSQ ++   R 
Sbjct: 630  EPITLNETACLLLTARDVSLLRNAEAQIRHLAYHDPLTNLPNRALLMDRLSQQIALLKRH 689

Query: 361  GYWGALLFVNVDTHD-ISDSLSTHELERLLSQLGARLSSYFTENIVVAHIEFGNFAFLVK 419
               GALLF+++D    I+DSL     + +L  + ARL +       VA +    F  L+ 
Sbjct: 690  NLRGALLFLDLDHFKHINDSLGHPVGDTVLKIITARLEASVRLEDTVARLGGDEFVVLLS 749

Query: 420  DLAVDAEMAGRRALALATELRQITMRPFHYGEHHFSLVANLGICLLDSVETLAPELVVRR 479
             L        ++   LA  LR++   P         +  ++GI L+    +   +L+ +R
Sbjct: 750  GLEGSRSDVSKQVQTLANTLRELLSEPMFLDGQRLQVTPSIGIALIPDHGSTPTDLL-KR 808

Query: 480  AQLAMEHGKSSEHAGCAFYHPDLARALDPEPSLLNALQRAITDNQLSLMFQPVVDVY-GK 538
            A +A+   K S       +H  + +A      +   L+ A+   + S+ FQP VD    +
Sbjct: 809  ADIALYRAKDSGRNTSQMFHTTMQKAASERLRMETDLRLALARGEFSVHFQPQVDARDNR 868

Query: 539  IESAEVLSRWSLANGEIVPVAQFISLAEQNGLVASLDLNVTERVCQLVKQFRQLGITLPR 598
            I  AE L RW   +       +FI + E +GL+  +   + +  C   KQ    G   P+
Sbjct: 869  IIGAEALVRWHHPDLGAQSPNEFIKVLEDSGLILEVGTWILDEACDGFKQLIAKGKIDPQ 928

Query: 599  ---LTLNISTLSFCQADFIEQFIAVVRSYELDDKQLGVELAESVFLTSKAFVEPRIIQLV 655
               L +NIS   F Q+DF+E+    + ++ L    L +E+ E + + +      ++ +L 
Sbjct: 929  QFSLCVNISPRQFRQSDFVERIENSLVTHGLPFSLLKLEITEGIVIQNLDDTIAKMRRLK 988

Query: 656  EAGIAITLDNFGAGQSALSCLHNYPLTEVKLD---VHCAVSLLNDASWNQALIQAVQPFK 712
            + G++  +D+FG G S+L+ L   P+  +K+D   V  A S  NDA   +A++   +   
Sbjct: 989  KLGVSFAMDDFGTGYSSLTYLKRLPVDTLKIDQSFVRDATSDPNDAEIIRAIVAMARSLN 1048

Query: 713  LPIVAKGVESVQQQQLFTTLGCTHFQGYNIARALSLNDFKQLV 755
            L ++A+GVE+++Q      L C  +QGY  +R L L  F++L+
Sbjct: 1049 LIMIAEGVETLEQLHFLQGLDCHLYQGYLHSRPLPLEAFERLL 1091



 Score = 60.8 bits (146), Expect = 4e-13
 Identities = 40/144 (27%), Positives = 70/144 (48%), Gaps = 2/144 (1%)

Query: 200 DSEQRWLFAVEGSRNGIWDWDLRTGEVFLSDRWKEMIGYLPDELEGAFQTWEARLHPDDK 259
           DS Q+ L A+ G+R G W WD+ +G++  S   + + G+ P +   A   +   L P+D+
Sbjct: 27  DSAQQLLAALNGARLGAWSWDIDSGQISWSRGTQALFGFDPRQPLPADVDYLDLLLPEDR 86

Query: 260 QAVLNCLDEYVSGKTKEFESVHRLLHRDGHYVWVFDRGMLVDWDHLGRPTRMIGIHVDVS 319
              +      V+G   E    HR++  DG   W+   G ++   H GRP RMIG+  +++
Sbjct: 87  ARAVRAFHAAVAGAPLEQAMHHRIVWPDGSLHWLEISGSVLPDKH-GRP-RMIGVIREIT 144

Query: 320 ESEKNHAAIAELVKQSASGHRMLP 343
              +   A+    K+ A+   + P
Sbjct: 145 HQREREQALRSSEKRFATLFHLSP 168



 Score = 53.5 bits (127), Expect = 6e-11
 Identities = 37/165 (22%), Positives = 77/165 (46%), Gaps = 3/165 (1%)

Query: 180 LQTSLQQVHERLGRAVKQLNDSEQRWLFAVEGSRNGIWDWDLRTGEVFLSDRWKEMIGYL 239
           L T L     +L  A + L DS++R   A++ ++ G WDW + +G ++ S R  ++ G  
Sbjct: 262 LSTFLDTTEHKL--AEQALKDSQERLDLALDSAQLGTWDWHIPSGMLYGSARAAQLHGLE 319

Query: 240 PDELEGAFQTWEARLHPDDKQAVLNCLDEYVSGKTKEFESVHRLLHRDGHYVWVFDRGML 299
           P     +F  +   +  +++  + N       G    ++  +R+   DG   ++  R  L
Sbjct: 320 PKPFHESFDAFFEGVPTEERNNMRNAYRSLREGPAGNYQLTYRVQLPDGSSRYLESRARL 379

Query: 300 VDWDHLGRPTRMIGIHVDVSESEKNHAAIAELVKQSASGHRMLPE 344
              D  G P RM G  +D+++  +   ++A   ++ A+  ++ P+
Sbjct: 380 YRNDD-GSPLRMAGTLLDITDQVEREQSLAASEEKFATLFQVSPD 423