Pairwise Alignments

Query, 764 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1085 a.a., Sensory box/GGDEF family protein from Pseudomonas fluorescens FW300-N1B4

 Score =  158 bits (400), Expect = 1e-42
 Identities = 141/583 (24%), Positives = 264/583 (45%), Gaps = 17/583 (2%)

Query: 182  TSLQQVHERLGRAVKQLNDSEQRWLFAVEGSRNGIWDWDLRTGEVF-LSDRWKEMIGYLP 240
            T+L+ + ++  R+   L  SE+++  A   S + I   +  TG    ++D +  + GY  
Sbjct: 510  TTLRDITQQQ-RSEAALKASEEKFAKAFHSSPDAITITERDTGRYLEVNDGFCRLTGYRA 568

Query: 241  DELEGAFQTWEARLHPDDKQAVLNCLDEYVSGKTKEFESVHRLLHRDGHYVWVFDRGMLV 300
            DE+ G    ++  +  ++KQ      +  + G+    E + R  ++ G  + V    + V
Sbjct: 569  DEVVGR-TVYQVGIWAEEKQRSALLAELQIKGRVHHQEMLGR--NKRGELLTV---EVSV 622

Query: 301  DWDHLGRPTRMIGIHVDVSESEKNHAAIAELVKQSASGHRMLPEAFMEQLSQYLSQRNRA 360
            +   L     ++    DVS  +   A I  L       +       M++LSQ ++   R 
Sbjct: 623  EPITLNETACLLLTARDVSLLKNAEAQIRHLAYHDPLTNLPNRALLMDRLSQQIALLKRH 682

Query: 361  GYWGALLFVNVDTHD-ISDSLSTHELERLLSQLGARLSSYFTENIVVAHIEFGNFAFLVK 419
               GAL+F+++D    I+DSL     + +L  + ARL +       VA +    F  L+ 
Sbjct: 683  NLRGALMFLDLDHFKHINDSLGHPVGDTVLKIITARLEASVRMEDTVARLGGDEFVVLLS 742

Query: 420  DLAVDAEMAGRRALALATELRQITMRPFHYGEHHFSLVANLGICLLDSVETLAPELVVRR 479
             L         +   LA  LR++   P         +  ++GI L+    +   +L+ +R
Sbjct: 743  GLEGSRSDVSAQVRELADTLRELLSEPMFLDGQRLQVTPSIGIALIPDHGSTPTDLL-KR 801

Query: 480  AQLAMEHGKSSEHAGCAFYHPDLARALDPEPSLLNALQRAITDNQLSLMFQPVVDVYG-K 538
            A +A+   K S       YH  + +A      +   L+ A++  + S+ +QP VD    +
Sbjct: 802  ADIALYRAKDSGRNTTQMYHNTMQKAASERLRMETDLRLALSRGEFSVQYQPQVDARNNR 861

Query: 539  IESAEVLSRWSLANGEIVPVAQFISLAEQNGLVASLDLNVTERVCQLVKQFRQLGITLP- 597
            I  AE L RW           +FI + E +GL+  +   + +  C   K     G+  P 
Sbjct: 862  ITGAEALVRWHHPQLGAQSPTEFIKVLEDSGLILEVGTWILDEACAAFKHLIAKGLINPL 921

Query: 598  --RLTLNISTLSFCQADFIEQFIAVVRSYELDDKQLGVELAESVFLTSKAFVEPRIIQLV 655
               L +NIS   F Q DF+E+    + S+ L    L +E+ E + + +      ++ +L 
Sbjct: 922  DFSLCVNISPRQFRQNDFVERIEHSLGSHGLPCSLLKLEITEGIVIQNLDDTISKMRRLK 981

Query: 656  EAGIAITLDNFGAGQSALSCLHNYPLTEVKLD---VHCAVSLLNDASWNQALIQAVQPFK 712
            + G++  +D+FG G S+L+ L   P+  +K+D   +  A +  NDA   +A++   +  +
Sbjct: 982  KLGVSFAMDDFGTGYSSLTYLKRLPVDTLKIDQSFIRDATTDPNDAEIIRAIVAMARSLE 1041

Query: 713  LPIVAKGVESVQQQQLFTTLGCTHFQGYNIARALSLNDFKQLV 755
            L ++A+GVE+++Q      LGC  +QGY  +R L + +F++L+
Sbjct: 1042 LEVIAEGVETLEQLAFLQGLGCHLYQGYLHSRPLPVEEFQKLL 1084



 Score = 55.8 bits (133), Expect = 1e-11
 Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 18/154 (11%)

Query: 201 SEQRW------LFAVEGSRNGIWDWDLRTGEVFLSDRWKEMIGY-----LPDELEGAFQT 249
           SEQ W      L A+ G+R G W WD+  G++  S   + + G+     LP++LE     
Sbjct: 15  SEQSWESAPQLLAALNGARLGAWYWDIERGQISWSRGTQALFGFDPRQPLPEDLE----- 69

Query: 250 WEARLHPDDKQAVLNCLDEYVSGKTKEFESVHRLLHRDGHYVWVFDRGMLVDWDHLGRPT 309
           +   L  +D+   +      ++G   E    HR+   DG   W+   G L+  D  GRP 
Sbjct: 70  YLDLLPQEDRAKAIRAFHAVIAGAPLEQAMHHRIRWPDGSLHWLEINGSLLP-DKNGRP- 127

Query: 310 RMIGIHVDVSESEKNHAAIAELVKQSASGHRMLP 343
           RMIG+  +++   +   A++   K+ A+   + P
Sbjct: 128 RMIGVIREITHQRQREQALSSSEKRFATLFHLCP 161



 Score = 49.3 bits (116), Expect = 1e-09
 Identities = 34/165 (20%), Positives = 74/165 (44%), Gaps = 3/165 (1%)

Query: 180 LQTSLQQVHERLGRAVKQLNDSEQRWLFAVEGSRNGIWDWDLRTGEVFLSDRWKEMIGYL 239
           L T L     ++  A   L DS++R   A++ ++ G WDW + +G ++ S R  ++ G  
Sbjct: 255 LSTFLDTTERKI--AEHALKDSQERLDLALDSAQLGTWDWHIPSGMLYGSARAAQLHGLD 312

Query: 240 PDELEGAFQTWEARLHPDDKQAVLNCLDEYVSGKTKEFESVHRLLHRDGHYVWVFDRGML 299
           P     +F  +   +  +++  + +       G    ++  +R+   DG   ++  R  L
Sbjct: 313 PKPFHESFDAFFEGVPDEERGTMRDAYRSLREGPAGNYQLTYRVQLTDGSSRYLESRARL 372

Query: 300 VDWDHLGRPTRMIGIHVDVSESEKNHAAIAELVKQSASGHRMLPE 344
              D  G P RM G  +D+++  +    +    ++ A+  ++ P+
Sbjct: 373 YR-DEQGNPLRMAGTLLDITDQVEREQQLVASEEKFATLFQVSPD 416