Pairwise Alignments

Query, 764 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 736 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

 Score =  188 bits (477), Expect = 1e-51
 Identities = 157/557 (28%), Positives = 262/557 (47%), Gaps = 34/557 (6%)

Query: 198 LNDSEQRWLFAVEGSRNGIWDWDLRTGEVFLSDRWKEMIGYLPDELEGAFQTWEARLHPD 257
           L DSE R   A+ GS +GIW+WD+   ++ LS+RW  M+G +P +     + W  R+HPD
Sbjct: 169 LEDSEARLTRALRGSEDGIWEWDVERDQLHLSERWTAMLG-MPMQAGYCSRGWFERVHPD 227

Query: 258 DKQAVLNCLDEYVSGKTKEFESVHRLLHRDGHYVWVFDRGMLVDWDHLGRPTRMIGIHVD 317
           D   +   +  +++G +      +R+    G Y+WV  RG+    +      RM G   D
Sbjct: 228 DLPGLREAIAAHLNGHSPSLAHEYRVRMETGEYLWVLVRGVAERCEQ--GTLRMAGSQTD 285

Query: 318 VSESEKNHAAIAELVKQSASGHRMLPEAFMEQLSQYLS--QRNRAGYWGALLFVNVDTHD 375
           +S  +    A  E ++ +A    +   A    L + L   Q+   G   ALLF+++D   
Sbjct: 286 ISARK----AAEECLRHAARHDALTGLANRLHLDELLKEVQQRPYGRAAALLFIDLDRFK 341

Query: 376 -ISDSLSTHELERLLSQLGARLSSYFTENIVVAHIEFGNFAFLVKDLAVDAEMAGRRALA 434
            I+DSL     +++L ++  RL         +A      F  L+ DLA +A+ A R A  
Sbjct: 342 LINDSLGHGAGDQVLVEVAQRLLHCLRPGDHLARFGGDEFVALLGDLACEAD-AERVAQR 400

Query: 435 LATELRQITMRPFHYGEHHFSLVANLGICLLD----SVETL-APELVVRRAQLAMEHGKS 489
           +   LR+    P   GE   S+ A++GI  L     ++  L A +L + RA+ A   GK 
Sbjct: 401 MLVALRE----PLQLGERTLSVSASIGIAPLQRDGQALNVLQAADLALYRAKSA---GKD 453

Query: 490 SEHAGCAFYHPDLARALDPEPSLLNALQRAITDNQLSLMFQPVVDV---YGKIESAEVLS 546
                C   H   AR L+ E    +AL +A+T  + +L +QP+  V      +   E L 
Sbjct: 454 QFALFCDGLHSKAARQLELE----SALAQALTRREFTLHYQPICRVEQGQPYLLGVEALL 509

Query: 547 RWSLANGEIVPVAQFISLAEQNGLVASLDLNVTERVCQLVKQFRQLGITLPRLTLNISTL 606
           RW   +  + P+ +FI + E++  +  +   V    C+ V++++Q G T     +N+S  
Sbjct: 510 RWRFEDKPVAPM-EFIPVLEESREIVRVGEWVLREACRQVRRWQQAGQTQLYCAVNLSIR 568

Query: 607 SFCQADFIEQFIAVVRSYELDDKQLGVELAESVFLTSKAFVEPRIIQLVEAGIAITLDNF 666
              Q DF E    V+R   L  + L +E+ E++ +     +   + ++   G+ + LD+F
Sbjct: 569 QLQQVDFAELLARVLRETGLPPQSLLLEITETLLMHDSEMMLNCLHEVAALGVRLALDDF 628

Query: 667 GAGQSALSCLHNYPLTEVKLDVHCAVSLLNDA---SWNQALIQAVQPFKLPIVAKGVESV 723
           G G  +L  L  YPL  +K+D     +  +DA   + + A+I   Q   L +VA+GVE  
Sbjct: 629 GTGYCSLGYLKRYPLHVLKVDRSFIAAAPDDADSVAISGAIIGLGQSLGLAVVAEGVERP 688

Query: 724 QQQQLFTTLGCTHFQGY 740
           +Q +     GC   QGY
Sbjct: 689 EQIEFLVAQGCRAVQGY 705