Pairwise Alignments

Query, 764 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 639 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) from Pseudomonas syringae pv. syringae B728a

 Score =  163 bits (413), Expect = 2e-44
 Identities = 117/447 (26%), Positives = 213/447 (47%), Gaps = 11/447 (2%)

Query: 306 GRPTRMIGIHVDVSESEKNHAAIAELVKQSASGHRMLPEAFMEQLSQYLSQRNRAGYWGA 365
           G+P   + +  D++  +++   +A+L    A           +++SQ L+    +    A
Sbjct: 186 GQPRHFVAVFSDITAIKRSEQELAQLAHYDALTELPNRLLLTDRISQALTSARSSRRGCA 245

Query: 366 LLFVNVDT-HDISDSLSTHELERLLSQLGARLSSYFTENIVVAHIEFGNFAFLVKDLAVD 424
           LL V++D   +I+DSL  +  + +L     RL++     + V+ +    FA LVK+    
Sbjct: 246 LLVVDLDNFRNINDSLGHNIGDEVLKAAAERLNALADSGMTVSRLGGDEFALLVKNCTHM 305

Query: 425 AEMAGRRALALATELRQITMRPFHYGEHHFSLVANLGICLLDSVETLAPELVVRRAQLAM 484
              A     ALA ++      P+    H   + A++GI L    + L  E ++R A  A+
Sbjct: 306 VHAA-----ALAQQVINAFKAPYPIAGHQLFVTASIGISLFPG-DALTAEQLLRNADSAL 359

Query: 485 EHGKSSEHAGCAFYHPDLARALDPEPSLLNALQRAITDNQLSLMFQPVVD-VYGKIESAE 543
              K+    G A Y  +L         L + L++AI  ++L + +QPV D V G+I + E
Sbjct: 360 FKAKTDGREGFALYTEELTAQAQQRVQLASELRQAIEQDELRVFYQPVYDLVTGRICAVE 419

Query: 544 VLSRWSLANGEIVPVAQFISLAEQNGLVASLDLNVTERVCQLVKQFRQLGITLPRLTLNI 603
            L RW      +V    FI +AEQNGL+A +D  V    C+ ++ +   G+++  + +N+
Sbjct: 420 ALVRWQHPTRGMVSPGDFIPIAEQNGLIADIDAWVLNTACRQMQAWLAEGVSIASVAVNV 479

Query: 604 STLSFCQADFIEQFIAVVRSYELDDKQLGVELAESVFLTSKAFVEPRIIQLVEAGIAITL 663
           S+  F + D   Q   V+    LD   L +E+ ES  +        ++ +L E G+++ +
Sbjct: 480 SSRLFSRGDVDRQVAEVLNETGLDPAFLELEVTESAVMEDPEQAIEQLHRLRELGLSLAI 539

Query: 664 DNFGAGQSALSCLHNYPLTEVKLDVHCAVSL---LNDASWNQALIQAVQPFKLPIVAKGV 720
           D+FG G S+L  L + P+ ++K+D      L   ++D +  +A+I       + ++A+G+
Sbjct: 540 DDFGTGYSSLLRLKSMPVQKLKIDQGFVAGLPGDVDDIAIVRAVIALASSLGMRVLAEGI 599

Query: 721 ESVQQQQLFTTLGCTHFQGYNIARALS 747
           E   Q     + GC   QGY  AR ++
Sbjct: 600 EHANQASFLLSNGCELGQGYWFARPMA 626