Pairwise Alignments

Query, 764 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1036 a.a., sensory box protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  154 bits (388), Expect = 3e-41
 Identities = 113/458 (24%), Positives = 221/458 (48%), Gaps = 14/458 (3%)

Query: 302  WDHLGRPTRMIGIHVDVSESEKNHAAIAELVKQSASGHRMLPEAFMEQLSQYLSQRNRAG 361
            +D   RP R + +  D++E +     I +                ++ L + +S  +R  
Sbjct: 551  YDAYQRPHRRVALFSDITEKKAQEQLIWQQANYDPLTKLPNRRMLLDYLDREISLASRQN 610

Query: 362  YWGALLFVNVDTH-DISDSLSTHELERLLSQLGARLSSYFTENIVVAHIEFGNFAFLVKD 420
               ALLF+++D   +++D+L     ++LL +   R+ +   ++ VVA +    F  L++D
Sbjct: 611  VRFALLFLDLDFFKEVNDTLGHDMGDKLLIECADRIKACIRDSDVVARLGGDEFTVLIRD 670

Query: 421  LAVDAEMAG-RRALALATELRQITMRPFHYGEHHFSLVANLGICLLDSVETLAPELVVRR 479
            +    ++ G  RA   A+ + +    PF  G     +  ++GI L    +    E +++ 
Sbjct: 671  IH---DVGGVERA---ASNILKAIAEPFQLGPDSAYISVSIGITLFPE-DASTREALLKN 723

Query: 480  AQLAMEHGKSSEHAGCAFYHPDLARALDPEPSLLNALQRAITDNQLSLMFQPVVDVY-GK 538
            A  AM   K        ++ P +         L+  L+ AI   Q +L++QP+V +  GK
Sbjct: 724  ADQAMYAAKEQGRNRFNYFTPSMQEQAKYRMRLIQDLRIAIEHQQFNLVYQPIVHLQSGK 783

Query: 539  IESAEVLSRWSLANGEIVPVAQFISLAEQNGLVASLDLNVTERVCQLVKQFRQLGITLPR 598
            +  AE L RW       +   +FI +AE  GL+  +   V E   +  + +     T  +
Sbjct: 784  VHKAEALLRWHHPERGYISPTEFIPVAEDTGLIMEIGSWVFEHAARQCRDWHHEFGTTIQ 843

Query: 599  LTLNISTLSFC-QADFIEQFIAVVRSYELDDKQLGVELAESVFLTSKAFVEPRIIQLVEA 657
            L++N S + F  + +  E+++A++   EL    + +E+ E + L + + V  +++   +A
Sbjct: 844  LSVNKSPVQFRDEGENFERWVALLEELELTHGGICIEITEGLLLDASSGVAEKLLTYRDA 903

Query: 658  GIAITLDNFGAGQSALSCLHNYPLTEVKLDVHCAVSLLNDASWN---QALIQAVQPFKLP 714
            GI ++LD+FG G S+L+ L  + +  +K+D     +L NDAS     +A+I   Q   + 
Sbjct: 904  GIQVSLDDFGTGYSSLAYLKKFDIDYLKIDQSFTRNLENDASDRTLCEAIIVMAQKLGMK 963

Query: 715  IVAKGVESVQQQQLFTTLGCTHFQGYNIARALSLNDFK 752
            ++A+GVE+ +QQ++   +GC + QGY  +  +S  +F+
Sbjct: 964  VIAEGVETAKQQEILKAMGCDYAQGYLYSAPVSREEFE 1001



 Score = 87.8 bits (216), Expect = 3e-21
 Identities = 37/124 (29%), Positives = 67/124 (54%)

Query: 201 SEQRWLFAVEGSRNGIWDWDLRTGEVFLSDRWKEMIGYLPDELEGAFQTWEARLHPDDKQ 260
           S ++    +  +  G WDWDL    +  ++R  +M+G   DE+    + W   +HPDD+ 
Sbjct: 328 SREQLSLVLASAELGFWDWDLNNDVIDRNERCADMLGCSVDEMRHNHRIWMDSIHPDDRM 387

Query: 261 AVLNCLDEYVSGKTKEFESVHRLLHRDGHYVWVFDRGMLVDWDHLGRPTRMIGIHVDVSE 320
           AVL  +D ++ G T      +R++ ++G  +WV D G ++  D  G+  RM G+H+D+++
Sbjct: 388 AVLKSIDRHLQGHTDSHNVEYRIIRKNGETLWVRDTGRVMQKDSSGKAIRMCGVHLDITQ 447

Query: 321 SEKN 324
              N
Sbjct: 448 VRHN 451



 Score = 33.9 bits (76), Expect = 5e-05
 Identities = 41/164 (25%), Positives = 68/164 (41%), Gaps = 10/164 (6%)

Query: 132 GALLLIGFTCVLYYLL---IRPFKLLSKSAKHVGTPEFTIQVPWSAAEVLSLQTSLQQVH 188
           G+LLL+G    +  LL   I PF L  +    +GT   T+ +    A +L  +   +++ 
Sbjct: 135 GSLLLLGMLVNIGSLLCFFIMPFDLAWELVSTIGT---TVMLVCPLATLLLARLLARRLE 191

Query: 189 ERLGRAVKQLNDSEQRWLFAVEGSRNGIWDWDLRTGEVFLSDRWKEMIGYLPDELEGAFQ 248
                 +K  +D   R  F V      I   D R  +V  + R  +M+ Y   EL     
Sbjct: 192 IERDEKIKLQDDFLFRSQFNVGNIGIAITSVDKRWIKV--NPRLCQMLKYSEKELLS--M 247

Query: 249 TWEARLHPDDKQAVLNCLDEYVSGKTKEFESVHRLLHRDGHYVW 292
            WE   H +D    L   ++ ++G   ++E   R   +DG  V+
Sbjct: 248 NWEQMSHEEDISVDLAHFNQMLAGAIDQYELNKRFYAKDGSIVY 291