Pairwise Alignments

Query, 764 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 817 a.a., GGDEF domain-containing protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  558 bits (1438), Expect = e-163
 Identities = 306/760 (40%), Positives = 450/760 (59%), Gaps = 13/760 (1%)

Query: 1   MQAIVQSAQALQDIERIEQEVSLATLDMNVMVYILLDANSRIRFANHAVWRDSNAIEVID 60
           +Q IV  A ALQD +RI QEVSLA  D+ +MV +L+D  S IR+ANH VW+ S A +VID
Sbjct: 44  LQHIVSEAMALQDTDRIAQEVSLAATDLELMVLVLVDPGSNIRYANHLVWQGSRASQVID 103

Query: 61  GYDVIQHHAVVQSGLASISVNPERLSIQAYYPVE-AQYPGATE--LVYLESDLAPLVAKA 117
           GY+  +H   V +    + VN +RLSIQAYYPV  +  P  +E  L+YLE DL+   ++A
Sbjct: 104 GYETARHQQTVAAKKPWVQVNSDRLSIQAYYPVNHSGVPRYSEINLIYLEYDLSGAYSRA 163

Query: 118 STELQQRFMRVWGLGALLLIGFTCVLYYLLIRPFKLLSKSAKHVGTPEFTIQVPWSAAEV 177
            +ELQQRF+++WG GALL++ F  V +Y+ +RP + L + A+          VP +++EV
Sbjct: 164 ISELQQRFLQIWGGGALLILMFLTVFHYVGVRPLRSLLRLARLKQAEPLAQTVPMASSEV 223

Query: 178 LSLQTSLQQVHERLGRAVKQLNDSEQRWLFAVEGSRNGIWDWDLRTGEVFLSDRWKEMIG 237
             LQ  + Q   +L R +KQL DSEQRWLFAVEGS+ GIWDW + +GE+FLSDRWKEM+G
Sbjct: 224 AKLQQYMYQTELKLKRTLKQLRDSEQRWLFAVEGSQTGIWDWQISSGELFLSDRWKEMLG 283

Query: 238 YLPDELEGAFQTWEARLHPDDKQAVLNCLDEYVSGKTKEFESVHRLLHRDGHYVWVFDRG 297
           Y P EL+  + +WE RLHPDDK  VL  L  Y+ G+   +ES HRL HR GHY+WV DRG
Sbjct: 284 YGPTELKNEYSSWEGRLHPDDKARVLERLQSYLKGEADVYESRHRLKHRQGHYIWVLDRG 343

Query: 298 MLVDWDHLGRPTRMIGIHVDVSESEKNHAAIAELVKQSASGHRMLPEAFMEQLSQYLSQR 357
           M+V+W   GRP R+IG   DVSE  +N  AIA      +  +     A M+ L ++  Q+
Sbjct: 344 MVVEWQEDGRPARVIGSQRDVSEDMRNQQAIAHQANHDSLTNLANRRAVMDALFEF--QQ 401

Query: 358 NRAGYW---GALLFVNVDTHD-ISDSLSTHELERLLSQLGARLSSYFTENIVVAHIEFGN 413
              G     GALL +++D    ++D+L  H  +RLL Q  ARLS +F+ N +VA +    
Sbjct: 402 AGPGSMLRLGALLLIDLDNFKLVNDALGHHHGDRLLIQAAARLSGFFSGNALVARLGGDE 461

Query: 414 FAFLVKDLAVDAEMAGRRALALATELRQITMRPFHYGEHHFSLVANLGICLLDSVETLAP 473
           FA +V DLA D E A  +A+ L  EL+Q   R F   +   ++ A++G+CL D+   + P
Sbjct: 462 FAIMVLDLATDTEQAAHQAMQLGAELKQQIARSFQLSDQQINVTASVGVCLFDNHHPVEP 521

Query: 474 ELVVRRAQLAMEHGKSSEHAGCAFYHPDLARALDPEPSLLNALQRAITDNQLSLMFQPVV 533
             +++ A +AM   K     GCA Y  +L         L N L+ AI   QLSL+FQP+ 
Sbjct: 522 AQLLKHADMAMYAAKDGGRNGCALYSDELEDKATENLWLQNELRHAIEREQLSLVFQPIF 581

Query: 534 DVYGKIESAEVLSRWSLANGEIVPVAQFISLAEQNGLVASLDLNVTERVCQLVKQFRQLG 593
           +  G++   E L RW       +  AQFI +AE +GL+  +   V   VC+ +K   + G
Sbjct: 582 NHDGELVCCEALCRWHHPERGPISPAQFIPVAEDSGLIIGIGQWVLLEVCRTLKAMSEKG 641

Query: 594 ITLPRLTLNISTLSFCQADFIEQFIAVVRSYELDDKQLGVELAESVFLTSKAFVEPRIIQ 653
             +P + +NIS   F Q DF+E+ +A+++++++   Q+ +EL E   L++   +  R+ +
Sbjct: 642 TPMPAVAVNISARHFNQIDFVERLLALLKAHQVSPAQIELELTEYALLSNLNAISERMQR 701

Query: 654 LVEAGIAITLDNFGAGQSALSCLHNYPLTEVKLDVHCAVSLLNDASWN---QALIQAVQP 710
           L  AG +I +D+FG G S+LS L + PL+ +KLD    V  +   + N   +A++     
Sbjct: 702 LRSAGFSIAIDDFGTGYSSLSYLQSLPLSRLKLDA-AFVGRIGTEAGNAIVRAIVDMAHS 760

Query: 711 FKLPIVAKGVESVQQQQLFTTLGCTHFQGYNIARALSLND 750
             L +VA+GVE+  QQ   ++L C  FQGY + + +  ++
Sbjct: 761 LMLKVVAEGVETEAQQAYLSSLECDFFQGYLLGKPMPASE 800