Pairwise Alignments

Query, 764 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 639 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein from Dechlorosoma suillum PS

 Score =  217 bits (553), Expect = 1e-60
 Identities = 169/586 (28%), Positives = 279/586 (47%), Gaps = 37/586 (6%)

Query: 193 RAVKQLNDSEQRWLFAVEGSRNGIWDWDLRTGEVFLSDRWKEMIGYLPDELEGAFQTWEA 252
           R +  L  + + +  A+EG+ +G+W W+  + E+    R   ++GY  + L      W  
Sbjct: 70  REIVILRRAARAYELAMEGAHDGMWTWNPLSKELTAGQRLHAILGYGENFLMDT-HAWLT 128

Query: 253 RLHPDDKQAVLNCLDEYVSGKTKEFESVHRLLHRDGHYVWVFDRGMLVDWDHLGRPTRMI 312
            +HP+D       + E++ G T  F   +R+  + G Y W+  RG+ V  D  G  T M 
Sbjct: 129 LVHPEDTARYNRAVSEHLKGLTPHFYCEYRVRAKSGEYRWIASRGIAVR-DARGVATLMA 187

Query: 313 GIHVDVSES---EKNHAAIAELVKQSASGHRMLPEAFMEQLSQYLSQRNRAGYWGALLFV 369
           G   D++E    E+    +A   + +   +R+L     ++L Q L++  R     A+LFV
Sbjct: 188 GSVTDITERKLHEERMRYLAHHDQLTGLPNRLL---LADRLPQALTRAKRQQSRAAVLFV 244

Query: 370 NVDTH-DISDSLSTHELERLLSQLGARLSSYFTENIVVAHIEFGNFAFLVKDLAVDAEMA 428
           ++D   +I+DSL  ++ +RLL  +  RL     ++  +       F  +++DL +  E A
Sbjct: 245 DLDRFKNINDSLGHNQGDRLLQSVARRLQECLRQSDTIVRQGGDEFIVILEDLQLP-EQA 303

Query: 429 GRRALALATELRQITMRPFHYGEHHFSLVANLGICLL----DSVETLAPELVVRRAQLAM 484
           G+    +  +L +    P+    + F L A++GI L     D  +TL     +R A  AM
Sbjct: 304 GQ----IGAKLLETLASPYREDGYDFFLTASIGIALYPDDGDDADTL-----LRNADTAM 354

Query: 485 EHGKSSEHAGCAFYHPDLARALDPEPSLLNALQRAITDNQLSLMFQPVVDVY-GKIESAE 543
             GKSS      FY   +   L    SL N L+RA+  ++L L +QP +D+  G++  AE
Sbjct: 355 YEGKSSGGNTVRFYTGRMNERLQSRVSLENGLRRALERDELQLYYQPQIDLASGRLLGAE 414

Query: 544 VLSRWSLANGEIVPVAQFISLAEQNGLVASLDLNVTERVCQLVKQFRQ-------LGITL 596
            L RW+   G ++P  QFI +AE+ GL+  + L V +        +R+       +G T 
Sbjct: 415 ALLRWN-DGGRLIPPDQFIPVAEETGLIVPIGLWVLDTAIARAAAWRRHWQLRQGMGATP 473

Query: 597 PRLTLNISTLSFCQADFIEQFIAVVRSYELDDKQLGVELAESVFLTSKAFVEPRIIQLVE 656
           PR+ +N+S   F      E  +  +    L    + +E+ ESV L  +A     + +L E
Sbjct: 474 PRIAINLSARQFWGGGIAEHVLLRLEREGLPPSTIELEVTESVLLRQEADCLEELRRLRE 533

Query: 657 AGIAITLDNFGAGQSALSCLHNYPLTEVKLDVHCAVSLLND-----ASWNQALIQAVQPF 711
           AG+ + LD+FG G S+LS L   P+  +K+D      L  D     A+  +A++      
Sbjct: 534 AGVGLALDDFGTGYSSLSYLRLLPIDTLKIDKSFIFPLDEDQDGEAAAIVRAILAMAHTL 593

Query: 712 KLPIVAKGVESVQQQQLFTTLGCTHFQGYNIARALSLNDFKQLVCP 757
              +VA+GVE   Q +L  T+GC  FQGY  +R L    F Q  CP
Sbjct: 594 GHKVVAEGVERQTQLELLRTMGCDSFQGYLESRPLPPEAFLQRYCP 639