Pairwise Alignments

Query, 764 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 974 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein from Dechlorosoma suillum PS

 Score =  158 bits (400), Expect = 1e-42
 Identities = 153/622 (24%), Positives = 276/622 (44%), Gaps = 63/622 (10%)

Query: 169 QVPWSAAEVLSLQTSLQQVHERLGRAVKQLNDSEQRWLFAVEGSRNGIWDWDLRTGEVFL 228
           Q P S  E  SL  SLQ     +   ++   D  + W   +E SR  ++  D     + +
Sbjct: 377 QAPGSV-EFASLFDSLQD----MAHTIRSREDQLRLWASVLEQSREAVFVTDAENRILLV 431

Query: 229 SDRWKEMIGYLPDELEGAFQTWEARLHPDDKQAVLNCLDEYVSGKTKE--FESVHRLLHR 286
           +  +  + GY  +E+ G    +                    SG+  E  + ++ R L  
Sbjct: 432 NRAFVAVTGYTLEEVRGRTPRF------------------LQSGRHDEAFYVNLWRSLRE 473

Query: 287 DGHY---VW--VFDRGMLVDW-------DHLGRPTRMIGIHVDVSESEKNHAAIAELVKQ 334
            GH+   +W    D  +   W       D  G  +  I I+ D++E +     I  L + 
Sbjct: 474 TGHWQGEIWDRAKDGRIHPQWAAISAVADAAGTVSNYIAIYSDLTEHKAAQDRIQFLAQH 533

Query: 335 ---SASGHRMLPEAFMEQLSQYLSQRNRAGYWGALLFVNVDTHD-ISDSLSTHELERLLS 390
              +   +RML     ++L+  ++   R G+   +LF+++D    I+DSL     + L+ 
Sbjct: 534 DPLTGLPNRML---LQDRLTVAIAAAAREGHEVGVLFIDLDRFKTINDSLGHSVGDELIK 590

Query: 391 QLGARLSSYFTENIVVAHIEFGNFAFLVKDLAVDAEMAGRRALALATELRQITMRPFHYG 450
            +  RL     E+  V+ +    F  ++  +    + A      LA    Q+T  PF+  
Sbjct: 591 GVTKRLQDAVRESDTVSRLGGDEFIVVLHRIRRSEDAAHVADAVLA----QLTA-PFNIA 645

Query: 451 EHHFSLVANLGICLLDSVETLAPELVVRRAQLAMEHGKSSEHAGCAFYHPDLARALDPEP 510
                + A++GI +  + +    E +++ A  AM H K        F+ P++        
Sbjct: 646 GKELRVTASIGISVFPA-DGEDEEGLIKNADTAMFHAKERGRNNYQFFRPEMNARAGERL 704

Query: 511 SLLNALQRAITDNQLSLMFQPVVDVY-GKIESAEVLSRWSLANGEIVPVAQFISLAEQNG 569
           +L N+L+ A+   +  L +QP V++  G++  AE L RW   +   V  A FI LAE+ G
Sbjct: 705 ALENSLRGAVQRKEFVLFYQPQVEIRSGRLVGAEALIRWRRGDSGFVSPADFIPLAEETG 764

Query: 570 LVASLDLNVTERVCQLVKQFRQ----LGITLPRLTLNISTLSFCQADFIEQFIAVVRSYE 625
            +  +   V    C+   Q+ Q    +G+    + +N+S+L F Q  F E  + +V  Y 
Sbjct: 765 TILEIGDWVLAEACRQQVQWDQQWPAMGLKPVPVAVNLSSLQFRQKHFKENLLDIVGDYP 824

Query: 626 LDDKQLGVELAESVFLTSKAFVEPRIIQLVEAGIAITLDNFGAGQSALSCLHNYPLTEVK 685
           L   ++ +EL ES+ +     V   + +L +AG+ +++D+FG G S+LS L  +PL ++K
Sbjct: 825 LPAGRIELELTESIVMEEPEQVGAVLAELKQAGLRLSIDDFGTGYSSLSYLKRFPLDKLK 884

Query: 686 LDVHCAVSLLNDASWNQALIQAV----QPFKLPIVAKGVESVQQQQLFTTLGCTHFQGYN 741
           +D      ++ND++ + A++ AV        L +VA+GVE   +  +   +GC   QGY+
Sbjct: 885 IDASFVRDIVNDSA-DLAIVHAVVSLGHSLGLKVVAEGVEHEAELLILNAMGCDIAQGYH 943

Query: 742 IARALSLNDFKQLVC---PRPL 760
             R +   +F+  V    P PL
Sbjct: 944 FCRPVPAEEFQAWVAAYVPVPL 965