Pairwise Alignments

Query, 764 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 778 a.a., hypothetical protein from Herbaspirillum seropedicae SmR1

 Score =  166 bits (419), Expect = 6e-45
 Identities = 126/454 (27%), Positives = 215/454 (47%), Gaps = 6/454 (1%)

Query: 307 RPTRMIGIHVDVSESEKNHAAIAELVKQSASGHRMLPEAFMEQLSQYLSQRNRAGYWGAL 366
           RP   I + +DVS   +    I +L            + FM++L + L +R  +G+ GA+
Sbjct: 319 RPGEQIWVVIDVSARLEAENRIDQLAFYDPVTQLPNKKLFMDRLRRGLDRRRTSGHAGAV 378

Query: 367 LFVNVDTHDIS-DSLSTHELERLLSQLGARLSSYFTENIVVAHIEFGNFAFLVKDLAVDA 425
             + +   D+S  S+   E+E+LL +   R SS  T    VA +E   FA   +  + + 
Sbjct: 379 FVMEIHRADLSYGSVKADEMEQLLIECARRFSSCITAEQTVARMEGEKFALGTEIRSNEL 438

Query: 426 EMAGRRALALATELRQITMRPFHYGEHHFSLVANLGICLLDSVETLAPELVVRRAQLAME 485
               R   ALA  +      P       F    NLGI ++   +  A ELV++ A+LAM 
Sbjct: 439 AECIRYCEALAQRILDAFTDPQSLSAARFPCSVNLGINIVRDEQYGASELVMQ-AELAMV 497

Query: 486 HGKSSEHAGCAFYHPDLARALDPEPSLLNALQRAITDNQLSLMFQPVVDVYGKIESAEVL 545
             +++      F+ P +    +    L   L++A+   Q  + +QP V   G +  AE L
Sbjct: 498 QSRAAGRNVFRFFDPAMQALANQRSQLEAELRQAVARRQFIVYYQPQVTYEGDVVGAEAL 557

Query: 546 SRWSLANGEIVPVAQFISLAEQNGLVASLDLNVTERVCQLVKQFRQLGITLPR-LTLNIS 604
            RW      IV    FISLAE  GL+  +   V  R+C  ++ +++ G+     + +N+S
Sbjct: 558 VRWQHPIRGIVSPTTFISLAEDMGLMDEIGRQVLHRICTDLENWQREGLARDLVVAINVS 617

Query: 605 TLSFCQADFIEQFIAVVRSYELDDKQLGVELAESVFLTSKAFVEPRIIQLVEAGIAITLD 664
              F   +F+ +F  ++R + +    + VEL ES+ +     V  ++  L    ++I+LD
Sbjct: 618 AQEFKVDNFVYRFREIMREHHVPSHSVKVELTESMMVDHIEDVITKMQALRSNEVSISLD 677

Query: 665 NFGAGQSALSCLHNYPLTEVKLDVHCAVSLLND---ASWNQALIQAVQPFKLPIVAKGVE 721
           +FG G S+LS L  +P+ ++K+D      + ND   AS  +++I   Q   L I+A+GVE
Sbjct: 678 DFGTGYSSLSYLGRFPIDQIKIDQTFVREMQNDAAMASIIRSIIMLGQSLNLSIIAEGVE 737

Query: 722 SVQQQQLFTTLGCTHFQGYNIARALSLNDFKQLV 755
           + QQ+      GC  +QGY  ++ +    F  L+
Sbjct: 738 TEQQRDFLHAQGCLLYQGYWYSKPIPGEQFADLL 771