Pairwise Alignments

Query, 601 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 635 a.a., hypothetical protein (RefSeq) from Shewanella sp. ANA-3

 Score =  294 bits (753), Expect = 7e-84
 Identities = 209/648 (32%), Positives = 321/648 (49%), Gaps = 73/648 (11%)

Query: 1   MHKLFTPSLLICVLSACSTAKPP-AESASQTAVAITQSSVKTMAPALQAIVDQSWQLQLS 59
           M ++    +L  + + CS   P      ++ A A     V ++   L  I  + + L+  
Sbjct: 5   MKRIINALMLAMLATGCSDPNPTQTNQTAEQAKAEKAVQVLSLKQQLAPITQRYFALR-- 62

Query: 60  ASPEMA--YGMGD----KSAAGKLQDLSPEALAKLNQGQIAILVQLKALDRSKLSKEDKI 113
             PE+A  YG+ +    K    KL D SP       +   AIL +L A+D S+LS  +++
Sbjct: 63  --PEIATYYGVAEDEAGKDVLSKLTDYSPSGENHRRKALKAILTELNAIDASQLSASEQV 120

Query: 114 NAQILEDQLQNEV----------DLYKYKDYYLPITAE--SGFHAYISSIAQGRF--NTQ 159
           +   ++ ++   +           L +Y  ++LP      SG H       + +F   T 
Sbjct: 121 SLGSIKSEIAGALLPAETVAYGTMLGEYGVWFLPYVVNHLSGLHVEFPGYMEDKFAVTTP 180

Query: 160 EDYQNYLDKLKALPNYFAQQTYWLKQGLKEGITPPKATLKGFENSISAYILPVEKSSYFK 219
           E  + YL++L   P         L Q ++ G+ PP        + I    + V +     
Sbjct: 181 EQAKAYLNRLTMYPAAMGTVIDKLDQDVQMGVIPP--------DFIIDKTIAVLQQQLVH 232

Query: 220 PFTQYPNHFTEAQKAQLTQ----QGRALVEQNVIPTYQAFYDFMTQEYMPNTRDNIAA-- 273
              ++P     + KA+LT     +  ALV            + +  +Y P TR  I+A  
Sbjct: 233 HANEHP--LVSSFKAKLTAAQVPESEALVNSAA--------ELVETKYYPATRQLISALQ 282

Query: 274 ------------NSLPNGDAFYENRVRYYTTLDITSAEVHELGLKEVKRIRQEMEQVIKS 321
                          P G   Y+  +++    ++T  E+H+LGL EV RI  EM+ ++K 
Sbjct: 283 AVRLKATHVAGLGHQPQGAKLYKAMIKHLANSEMTPDEIHQLGLDEVARITTEMDVLLKQ 342

Query: 322 VGF-KGSFADFLYFLRTDPQF-YATSAD---QLLKEAAFIAKKADATLPKYFGKLPRKPY 376
           VG+ KG+  + +  L  DP++ Y  +A+   QL+ +      K +A LP +FG LP +  
Sbjct: 343 VGYRKGTVGERMQRLLKDPKYIYPNTAEGKQQLMTDIHGYLTKVNAKLPLWFGLLPNQEV 402

Query: 377 GIAPVPAEIAPKYTSGRYSGSNRD-DEPGYYWVNTYALDKRPLYELEALTLHEAVPGHHL 435
            +  VP   A   +   Y   ++D    G +W++ Y +   P Y L+ LT HE  PGHHL
Sbjct: 403 AVEAVPDSRAAATSGAFYDAPSQDGSRKGTFWISLYDMAALPSYSLQTLTYHETNPGHHL 462

Query: 436 Q--ISLNSELSSQPDFRRYSYISAFGEGWGLYSEYLGLEAGFYQD-PYSNFGRLTYEMWR 492
           Q  I L+  L   P      Y +A GEGW LY+E L  E G YQD P ++ GRL  E+ R
Sbjct: 463 QTLIGLSDTL---PLLSTIFYSNAAGEGWALYAERLAAEMGMYQDNPINDLGRLQSELHR 519

Query: 493 AARLVVDTGMHAQGWSREQAIEFMANNTALSLHNVTTEIDRYITWPGQALSYKIGELTIK 552
           A RLVVDTGMHA+ WSRE+AI++      + L   T EI+RY+ WPGQAL YK+GEL I 
Sbjct: 520 AVRLVVDTGMHAKDWSREKAIDYAVATEGIHLSEATGEIERYVVWPGQALGYKLGELKII 579

Query: 553 RLRAKAEQALGDKFDIRAFHDAVLENGSVPMSVLEQQINDFIEAKKAA 600
            LR KA++ALGDKFDI+ FHD +LENG++P+ +LEQ+++ ++E+ KAA
Sbjct: 580 ELRTKAKKALGDKFDIKVFHDRLLENGALPLDLLEQKMDLWLESAKAA 627