Pairwise Alignments

Query, 235 a.a., ABC transporter, permease protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 283 a.a., sulfate ABC transporter, permease protein CysT (NCBI) from Rhodospirillum rubrum S1H

 Score = 81.3 bits (199), Expect = 2e-20
 Identities = 71/248 (28%), Positives = 114/248 (45%), Gaps = 29/248 (11%)

Query: 4   GWLALLQQALSLL--FSLDP-DVWSIISV-----SFSVSFAALLITLVPSMVLGFVLAFA 55
           G L LL  A  ++   SL P D W+I +      +  +SF A L+    +MV G ++A+ 
Sbjct: 31  GLLVLLPLAAVVIKAASLGPADFWAIATAPRTLAALRLSFGAALLAAAINMVFGLLVAWV 90

Query: 56  ----HFPGKWFVTNLVQTLQSIPTVVIGLLVYLILTRNG-------PLGDLKWLFTQEGM 104
                FPG+  +  LV    ++PT V G+ +  +   NG       PLG LK  F   G+
Sbjct: 91  LVRYDFPGRRILDALVDLPFALPTAVAGIALTGLYANNGWIGQYLEPLG-LKVAFAPAGV 149

Query: 105 ILGQMLICAPVMIAMSQAAFTSVDRRAWETSRTLGASWAGAVWAVCRELRMP-----LLL 159
           ++    +  P ++   Q     ++R A E + TLGA      W   R + MP     LL 
Sbjct: 150 VVALTFVGLPFVVRTVQPVLADLEREAEEVAATLGA----GRWDTFRRVLMPALAPALLT 205

Query: 160 AIVAAFSRILTEVGCSMMVGGNILNVTRNIPTAIALETSKGDFAQAIALGLVLLILALIL 219
               +F+R + E G  + + GNI  V+   P  I ++  + D+  A A+  V+L L+  L
Sbjct: 206 GFALSFARGVGEYGSVIFIAGNIPMVSEIAPLLIVIKLEEFDYRGATAVAAVMLALSFAL 265

Query: 220 NFALGSLR 227
             A+  L+
Sbjct: 266 LLAINLLQ 273