Pairwise Alignments

Query, 235 a.a., ABC transporter, permease protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 245 a.a., molybdate ABC transporter permease protein (RefSeq) from Shewanella sp. ANA-3

 Score = 80.5 bits (197), Expect = 3e-20
 Identities = 61/205 (29%), Positives = 106/205 (51%), Gaps = 23/205 (11%)

Query: 29  VSFSVSFAALLITLVPSMVLGFVLAFAHFPGKWFVTNLVQTLQSIPTVVIGLLVYLILTR 88
           +S  VS  A+L +L   ++  ++LA   FPGK    +L+     +P VV+G L+ + + R
Sbjct: 27  LSLKVSAVAVLASLPLGILCAWLLARVEFPGKAIFDSLLHLPLVLPPVVVGYLLLISMGR 86

Query: 89  NGPLGDLKWL---------FTQEGMILGQMLICAPVMIAMSQAAFTSVDRRAWETSRTLG 139
            G +G  +WL         F+  G  L   ++  P+M+   + +F +VD R  + +RTLG
Sbjct: 87  QGVIG--QWLYNWFGVSFSFSWRGAALAAAVVSFPLMVRAIRQSFETVDIRLEQAARTLG 144

Query: 140 ASWAGAVWAVCRELRMPL-----LLAIVAAFSRILTEVGCSMMVGGNILNVTRNIPTAI- 193
           +S     W V   + +PL     +  ++ AF+R L E G ++    NI   TR IP A+ 
Sbjct: 145 SS----RWRVFLTITLPLTSPGIVSGMIIAFARSLGEFGSTITFVSNIPGETRTIPLAMY 200

Query: 194 -ALETSKGDFAQAIALGLVLLILAL 217
             +ET   ++ QA+ L ++ +++AL
Sbjct: 201 SFIETPGAEY-QAMRLCIISIVIAL 224