Pairwise Alignments

Query, 709 a.a., sensor histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 656 a.a., putative signal transduction histidine kinase from Phaeobacter inhibens DSM 17395

 Score =  375 bits (962), Expect = e-108
 Identities = 247/678 (36%), Positives = 379/678 (55%), Gaps = 44/678 (6%)

Query: 19  VRYRILILTLLPILLTLVSLVFITIY-WNISYTGKQLFMKVKADLAVAENTLQQVQVRQE 77
           VR R+L+L LLP+ + +  L+ + +  WN  Y    L + V++DL +A+  L+Q+Q    
Sbjct: 4   VRLRLLLLALLPLSVVMPLLLVVAMARWNADYDNV-LIVNVESDLKIADQYLRQLQANSG 62

Query: 78  KQLERVMTSWTFQNDFRPILSGALAHRASIDTFLHEQKKQLDLDFLRLVSVAEAAADPDL 137
             L  + +S  F    R  L   L        FL ++++ L LDFL  + +     D   
Sbjct: 63  DDLAAIASSTQFAKVLRAPLQDQLR-------FLDQRRQALRLDFLYYLPMRNIDRDARR 115

Query: 138 RQILPKIGGMLPYSGLMVLSRERLARIDPDLAQRASIPLLATLRAQSPDKQVEERGLLSR 197
             ++ +       S + + +   L  I  DL  RA IPL+ T  A    +  E+RG++  
Sbjct: 116 WPVISRAAQGDLASEIDIFAAADLDVISADLRNRARIPLIETEAAAPTTRPAEDRGMVIH 175

Query: 198 SLLPI--PDSEGKVAWYLDGGVLFNRDTRIVDHIRDLVYDKGTLPERSIGTVTIFLDNIR 255
           S  P+  P SEG     L  G L NRD   +D I  LVY   +      GT T+FLD+ R
Sbjct: 176 SAAPVTTPGSEG----VLVAGRLLNRDLDFIDTINALVYLGDSHRISRKGTATLFLDDTR 231

Query: 256 VSTNVPLHFFPQPNESQGRALGSLVSEEVREKVLNHGELWVDRAFVYNDWFISAYAPLED 315
           +STNV L           RALG+ VS+ VR+ VL  G+ W+DRAFV NDW+IS Y PL D
Sbjct: 232 ISTNVRLF-------EDVRALGTRVSQAVRDAVLGDGQTWLDRAFVVNDWYISGYLPLTD 284

Query: 316 IRGQRVGMIYTGFSESPFIHNYLLNIIELGTILMLVLLISGLLVYRGAYSLLQPIERIHH 375
             G+RVGM+Y GF E+PF    +     +    + VLL+S  L    A  +  P+E++ H
Sbjct: 285 SFGKRVGMLYVGFLEAPFAAAKVSAYWTVVLSFLSVLLLSAPLFLWLAKGIFAPLEQMSH 344

Query: 376 VVQAVQSG----RNVRIGALGLDRDNELSNLAEQFDRMLDLLQRRNAQIQAAAEQLEMKV 431
            +  V+ G    RN  +G     R +E+  +A   D +LD +Q R+ +++  A +L  +V
Sbjct: 345 TMARVERGDLAARNGNVG-----RRDEIGQVAAHLDSLLDQVQDRDQKLRDWAGELNDRV 399

Query: 432 EERTRSLQDKTLELQRNVALLNETRQQLVTNEKLTALGELTAGIAHEINNPTAVILGNME 491
           ++RT  L+    +L+        T +QLV +EKL ++GE+TAG+AHEINNP AVI GN++
Sbjct: 400 DQRTAELRAANDKLEA-------TYKQLVMSEKLASIGEITAGVAHEINNPIAVIQGNVD 452

Query: 492 LLRYELGDKAEVVKEEIDLVIQQVGRISTIIRSLLQYSRPGEFNAPLEMHPITPIIEEML 551
           ++R  LG   E V+ E+ L+  Q+ RIS I+  LLQ++RP EF    E   + P++ + L
Sbjct: 453 VMRMTLGTATEDVETELALIDDQILRISAIVGKLLQFARPTEFGTFEERLDLAPVVSDCL 512

Query: 552 VLVRHSIQKQEVVLITELNASCPVQVNRPQLLQVLINLVVNAAHAMDGKGRIWVRTYDWV 611
           VLV H + KQ+V +I + + +  V+++  +L QV+INL++NA  AM+G G++ +   +  
Sbjct: 513 VLVDHVVTKQDVAVIKQFSETPAVRIDPGELQQVVINLILNAVQAMEGSGQLVLTLREMD 572

Query: 612 QQDIAIGVKIEVEDEGSGIEPEQLGRIFDPFYTTR-KDGTGLGLSLSYGIIKRIGGTIEV 670
           + D++ G  +EV D GSGI  + L  +F+PFYTT+  +GTGLGLS+S  +I+R GG I V
Sbjct: 573 RNDVS-GACLEVADTGSGIAAKDLPSVFNPFYTTKLGEGTGLGLSISQTLIQRAGGVISV 631

Query: 671 SSVL--GK--GSIFTIGL 684
            + +  GK  G++F+I L
Sbjct: 632 ENRVEDGKIIGAVFSIWL 649