Pairwise Alignments

Query, 219 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 258 a.a., Putative preQ0 transporter from Xanthomonas campestris pv. campestris strain 8004

 Score = 55.5 bits (132), Expect = 9e-13
 Identities = 50/208 (24%), Positives = 85/208 (40%), Gaps = 32/208 (15%)

Query: 12  ALLLLVGFHILIICVSNYLVQLPFQLFGY----HTTWGAFSFPFVYLATDLTVRIFGQTP 67
           AL   +G  I  +  +  +  L + LFG       T G   +P V++ TD     FG   
Sbjct: 27  ALAEFIGVKIFALEDTLGIAPLNWNLFGQTGSLSFTAGTLLWPVVFIMTDTINEFFGSRG 86

Query: 68  ARSI----------------ILKAMVPA---LMISYVMGVVFHQGSFQGIDSLSQWNTFV 108
            R I                   A+ PA   +  +   GV  +Q +F  +     W    
Sbjct: 87  VRFISWVAVGLIGYGFVFAFAAIALAPAGWWVTAAQSQGVPDYQAAFAAVFGQGLWTIG- 145

Query: 109 FRIAFASFAAYLIGQLMDITVFARLRQS---RSWWVAPAASTIVGNLVDTLVFFSVAFYA 165
                 S  A+L GQL+D++VF R+R++   +  W+    ST V  LVD+ V   +AF  
Sbjct: 146 -----GSLVAFLFGQLIDVSVFHRIRRATGEKHVWLRATGSTAVSQLVDSFVVIYIAFVL 200

Query: 166 STDSFMATNWPEIAAVDYSFKLLVSLGL 193
               +    +  ++ ++Y +K+  ++ L
Sbjct: 201 GPQHWSIDQFLAVSTLNYLYKMGFAIAL 228