Pairwise Alignments

Query, 219 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 236 a.a., conserved integral membrane protein (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score = 58.9 bits (141), Expect = 8e-14
 Identities = 57/197 (28%), Positives = 82/197 (41%), Gaps = 22/197 (11%)

Query: 9   LRRALLLLVGFHILIIC---VSNYLVQLPFQLFGYHTTWGAFSFPFVYLATDLTVRIFGQ 65
           L   L    G H LI+    V N  V     LFG  TT G   +  V+LATD+     G+
Sbjct: 19  LMHRLFGAAGLHALIVLNLMVCNIQVLKTVTLFGMTTTLGNIVYAGVFLATDMLGEFHGK 78

Query: 66  TPARSIILKAMVPALMISYVMGVVFHQGSFQGIDSLSQWNT--------FVFRIAFASFA 117
             AR  +L   V  L     +G  + Q S     + S +           + R+A AS  
Sbjct: 79  AEARKGVLLGFVTLL-----LGTAYMQASLLYAPAPSDFAQPHLEALFGLLPRLAGASLL 133

Query: 118 AYLIGQLMDITVF---ARLRQSRSWWVAPAASTIVGNLVDTLVFFSVAFYASTDSFMATN 174
           AYL+ Q  D+  +    +  + R  W+   AST+V  ++D+ VF   AF       +   
Sbjct: 134 AYLVSQYHDVWAYHFWMQRTEGRHLWLRNNASTLVSQMLDSSVFCLAAFIGVYPFEVVL- 192

Query: 175 WPEIAAVDYSFKLLVSL 191
             EI    Y FK +V+L
Sbjct: 193 --EIMLTTYLFKAVVAL 207