Pairwise Alignments

Query, 382 a.a., multidrug resistance protein, AcrA/AcrE family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 405 a.a., efflux RND transporter periplasmic adaptor subunit from Rhodopseudomonas palustris CGA009

 Score =  333 bits (853), Expect = 7e-96
 Identities = 175/366 (47%), Positives = 243/366 (66%), Gaps = 1/366 (0%)

Query: 4   TIKLASVISVALWMAACSPQEDKAAHGGAGPQSMEVGVIKVEAKPQVIKIELPGRSKAFL 63
           T+   + ++ A+ +A C P  D      AG    E+G++ +  +   I  ELPGR  A  
Sbjct: 6   TVAAIAALAFAVALAGCKPHSDDHGADSAGVDRPELGIVTLRPQAVAITAELPGRVVASQ 65

Query: 64  EAEVRPQVNGIITKRSFVEGGNVKQGESLYQIDSATYKAALVSANADLARANASLASAKA 123
            AEVRPQV+GI+ +R F EG  V +G SLYQID A YKAA  SA A L +A A++ SA+A
Sbjct: 66  TAEVRPQVSGIVQQRLFTEGSEVAEGASLYQIDPAPYKAAYDSAVAALRKAEAAVPSAQA 125

Query: 124 KAARYQQLVKTNAISKQDFDEADAAYKEALASVTVAEAAINTAKINLEYTEVLAPISGRI 183
           K+ RYQ LVK NA+SKQDFD+A AA  +A A V  A+AA+ TA+INL+YT + API GR 
Sbjct: 126 KSERYQGLVKQNAVSKQDFDDAVAALAQAKAEVATAKAAVETARINLDYTTIKAPIGGRT 185

Query: 184 GKSSVTAGALVTANQSQTLATIQQLDPINVDIAQSSAQLLRLKAKLKQGKL-LAADNADV 242
            +SS+T GALVTA Q+  L TI+ LDPI VD+ QSS  LL L+  +  G+L ++  +  V
Sbjct: 186 DRSSLTPGALVTAGQTGLLTTIRTLDPIFVDVIQSSTNLLNLRQAIDSGRLKVSGPHVAV 245

Query: 243 QLVLVDGTVYGHTGKLQFAEVSVDQNTGSVILRAEFPNPDGVLLPGMYVRAMLNAGTDPQ 302
           +L L +G +Y   GK++F+E +V  +TG+V LRA FPNP  +LLPGMY RA++  G  P 
Sbjct: 246 KLKLENGAIYPLAGKMEFSEANVSTSTGTVTLRAVFPNPRRLLLPGMYARAVVEEGVAPD 305

Query: 303 AILVPQKAITRNAKGEAVAMVVNAQGQVEAKIVTTAEVINHQWRVTSGLAVGDQVIVEGL 362
           + LVPQ+A+TRN KGEAVAM ++  G+ E ++++    + + W + +G+  GD+VIVEG 
Sbjct: 306 SFLVPQRAVTRNTKGEAVAMFLDKDGKAEERVLSVIRSVGNNWLIGAGVHDGDRVIVEGT 365

Query: 363 QKIRPG 368
           Q +RPG
Sbjct: 366 QYVRPG 371