Pairwise Alignments

Query, 1044 a.a., AcrB/AcrD/AcrF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1044 a.a., Hydrophobe/amphiphile efflux-1 HAE1 from Pseudomonas syringae pv. syringae B728a

 Score = 1306 bits (3381), Expect = 0.0
 Identities = 666/1036 (64%), Positives = 815/1036 (78%), Gaps = 4/1036 (0%)

Query: 1    MARFFIDRPIFAWVIALIIMLAGVLSIRTLPVSQYPSIAPPTVVISANYPGASAKIVEDS 60
            M++FFIDRPIFAWVIAL+IML G LSI +LP++QYPSIAPP + I   YPGASA+ V+D+
Sbjct: 1    MSKFFIDRPIFAWVIALVIMLVGALSISSLPINQYPSIAPPAIGIQVTYPGASAQTVQDT 60

Query: 61   VTQVIEQRMKGIDHLRYIASTSDSFGNAEITLTFNAEADPDIAQVQVQNKLQGAMTLLPQ 120
            V QVIEQ++ GID+LRY++S S+S G+  IT TFN   +PD AQVQVQNKL  A  LLPQ
Sbjct: 61   VVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFNQGTNPDTAQVQVQNKLNLATPLLPQ 120

Query: 121  EVQAQGVDVNKSSSGFLMVLGFVSTDGSLDKGDIADYVGANVQDPMSRVPGVGEIQLFGA 180
            EVQ QG+ V K+   FLMV+G VS DGS+ K D+A+Y+ +N+QDP+SR  GVG+ Q+FG+
Sbjct: 121  EVQQQGIRVTKAVKNFLMVIGLVSEDGSMGKEDLANYIVSNMQDPISRTSGVGDFQVFGS 180

Query: 181  QYAMRIWLDPLKLTQYNLTSLEVISAIRAQNAQVSAGQLGGTPSIQGQELNATVSAQSRL 240
            QYAMRIWLDP KL  + LT ++V  AI AQN QVS+GQLGG PSI GQ+LNAT+  ++RL
Sbjct: 181  QYAMRIWLDPAKLNNFQLTPVDVKDAITAQNVQVSSGQLGGLPSISGQQLNATIIGKTRL 240

Query: 241  QTPEEFRKIILKSDTSGANVFLGDVARVELGSESYAVVSFYNGKPATGLAIKLATGANAL 300
            QT E+F  I LK +T G+ V L DVA V LG+E+Y+  S ++GKPA+GLAIKLATGANAL
Sbjct: 241  QTAEQFGNIFLKVNTDGSQVRLKDVATVGLGAENYSTDSQFDGKPASGLAIKLATGANAL 300

Query: 301  DTAEAVRDKVEELRPFFPQGLDVVYPYDTTPFVEKSIEGVVHTLLEAIVLVFVIMYLFLQ 360
            DTA+A+R  V  L PFFP G+ VVYPYDTTP V +SI GVVHTL+EAIVLVF++MYLFLQ
Sbjct: 301  DTAKAIRATVSSLEPFFPPGMKVVYPYDTTPVVSESINGVVHTLIEAIVLVFLVMYLFLQ 360

Query: 361  NFRATLIPTIAVPVVLLGTFAILSATGFSINTLTMFAMVLAIGLLVDDAIVVVENVERVM 420
            NFRAT+I T+ VPVVLLGTF IL+A GF+INTLTMF MVLAIGLLVDDAIVVVENVERVM
Sbjct: 361  NFRATIITTMTVPVVLLGTFGILAAFGFTINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420

Query: 421  SEEGLSPLEATRKSMDQITGALVGIGLTLSAVFVPMAFMSGSTGVIYRQFSITIVSAMAL 480
             EE LSP +AT KSM QI GALVGI L LSAV +PMAF  GSTGVIY+QFSITIVSAMAL
Sbjct: 421  EEEKLSPRDATIKSMTQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMAL 480

Query: 481  SVLVALILTPALCATMLKPV-QKGHGHIETGFFGWFNRNFDRLTNRYESSVAGIVKRGFR 539
            SV+VALI TPALCATMLKP+  + HG  + GFFGWFNR FDR    YE  V  ++K  + 
Sbjct: 481  SVVVALIFTPALCATMLKPIDHEKHGQPKRGFFGWFNRTFDRSVLSYERGVGNMLKHKWP 540

Query: 540  VMMIYVALVVAVGWIFMRMPTAFLPDEDQGILFTQAILPTNSTQESTLKVLDKVSDHFMA 599
              + Y+ +   + ++FMR+P AFLP+EDQG++F Q   P  S+ E T +V+D++ ++ + 
Sbjct: 541  AYLGYILICAGMVFMFMRIPAAFLPEEDQGVIFAQIQTPAGSSTERTQEVIDQMREYLLT 600

Query: 600  EE--GVRSVFSVAGFSFAGQGQNMGIAFVGLKDWSEREAPGMDVQSIAGRAMGAFSQIKD 657
            +E   V+SVFSV GF+FAG+GQ+  IAFV LK W ER++    V  +A RA G F  ++D
Sbjct: 601  KESGAVKSVFSVNGFNFAGRGQSSAIAFVMLKPWEERDS-NNSVFELAKRAQGYFFSLRD 659

Query: 658  AFVFAFVPPAVIELGTANGFDMYLQDKNGQGHDKLIAARNQLLGMAAQNPNLMGVRPNGQ 717
            A VFA VPP+V+ELG A GFD+YLQD+ G GHDKL+ ARNQ LGMAAQ+  L GVRPNG 
Sbjct: 660  AMVFAVVPPSVLELGNATGFDVYLQDQGGVGHDKLMEARNQFLGMAAQSKILAGVRPNGL 719

Query: 718  EDAPIYQLHIDHAKLSALGVDIANVNSVLATAWGGSYVNDFIDRGRVKKVFVQGDAQYRM 777
             D P YQL ID  + SALG+ ++++N+ L+ A GGSYVNDFIDRGRVKKV++QGDA  RM
Sbjct: 720  NDEPQYQLIIDDERASALGITLSDINNTLSIALGGSYVNDFIDRGRVKKVYIQGDAGARM 779

Query: 778  QPEDLNTWYVRNNKGDMVPFSAFATGSWEYGSPRLERFNGLPAVNIQGATAPGFSTGAAM 837
             PEDL  WYVRN+ G+MVPFSAFA+G W YGSP+L R+NG+ A  + G  APG+S+G AM
Sbjct: 780  TPEDLKKWYVRNSAGEMVPFSAFASGKWSYGSPKLSRYNGVAAEEVLGTPAPGYSSGDAM 839

Query: 838  TIMEDLVKQLPPGFGIEWNGLSYEERLSGNQAPALYALSILVVFLVLAALYESWSVPFAV 897
              +E L K+LP G GI W GLSYEERLSG+QAPALYALS+LVVFL LAALYESWS+P AV
Sbjct: 840  NEVEALAKKLPQGIGISWTGLSYEERLSGSQAPALYALSLLVVFLCLAALYESWSIPIAV 899

Query: 898  ILVVPLGIIGALLAMNGRGLPNDVFFQVGLLTTVGLATKNAILIVEFAKEFYEKGAGLVE 957
            ILVVPLG+IGAL+A + RGL NDVFFQVGLL TVGLA KNAILIVEFAKE +E+G  LV+
Sbjct: 900  ILVVPLGVIGALMATSLRGLSNDVFFQVGLLVTVGLAAKNAILIVEFAKELHEQGKSLVD 959

Query: 958  ATLHAVRVRLRPILMTSLAFGLGVVPLAISTGVGSGSQNAIGTGVLGGMMSSTFLGIFFV 1017
            A + A R+RLRPI+MTS+AF LGVVPLAIS+G GSGSQ++IGTGV+GGM+++  L IF+V
Sbjct: 960  AAIEACRMRLRPIIMTSMAFILGVVPLAISSGAGSGSQHSIGTGVIGGMITAVILAIFWV 1019

Query: 1018 PLFFVIVERIFSKRER 1033
            PLFFV V  +F  +++
Sbjct: 1020 PLFFVTVSGLFKSKQK 1035



 Score = 60.8 bits (146), Expect = 5e-13
 Identities = 63/276 (22%), Positives = 118/276 (42%), Gaps = 19/276 (6%)

Query: 242  TPEEFRKIILKSDTSGANVFLGDVARVELGSESYAV--VSFYNGKPATGLAIKLATGANA 299
            TPE+ +K  +++       F    +    G  SY    +S YNG  A  +   L T A  
Sbjct: 780  TPEDLKKWYVRNSAGEMVPFSAFAS----GKWSYGSPKLSRYNGVAAEEV---LGTPAPG 832

Query: 300  LDTAEAVRDKVEELRPFFPQGLDVVYPYDTTPFVEKSIEGVVHTLLEAIVL--VFVIMYL 357
              + +A+ + VE L    PQG+ + +   T    E+ + G     L A+ L  VF+ +  
Sbjct: 833  YSSGDAMNE-VEALAKKLPQGIGISW---TGLSYEERLSGSQAPALYALSLLVVFLCLAA 888

Query: 358  FLQNFRATLIPTIAVPVVLLGTFAILSATGFSINTLTMFAMVLAIGLLVDDAIVVVENVE 417
              +++   +   + VP+ ++G     S  G S +      +++ +GL   +AI++VE  +
Sbjct: 889  LYESWSIPIAVILVVPLGVIGALMATSLRGLSNDVFFQVGLLVTVGLAAKNAILIVEFAK 948

Query: 418  RVMSEEGLSPLEATRKSMDQITGALVGIGLTLSAVFVPMAFMSGSTGVIYRQFSITIVSA 477
              + E+G S ++A  ++       ++   +      VP+A  SG+           ++  
Sbjct: 949  E-LHEQGKSLVDAAIEACRMRLRPIIMTSMAFILGVVPLAISSGAGSGSQHSIGTGVIGG 1007

Query: 478  MALSVLVALILTPALCAT---MLKPVQKGHGHIETG 510
            M  +V++A+   P    T   + K  QK   H E G
Sbjct: 1008 MITAVILAIFWVPLFFVTVSGLFKSKQKHISHDEAG 1043